Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:14115545-14115603	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr6:14115461-14115583	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14112824..14115645-chr6:14117420..14120304,3	MCF-7	breast:
2	chr6:14091013..14092925-chr6:14113738..14115849,2	K562	blood:

Variant related genes	Relation type
CD83	TF binding region
ENSG00000112149	Chromatin interaction

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10080702	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080734	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10484346	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55875628	1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs57376077	1.00[EUR][1000 genomes]
rs60371731	1.00[EUR][1000 genomes]
rs61291802	1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73373532	1.00[EUR][1000 genomes]
rs73373534	1.00[EUR][1000 genomes]
rs73724053	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs9464655	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9464656	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9464658	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9476487	1.00[EUR][1000 genomes]
rs9476502	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9476503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14110000-14117200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:14110200-14117000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:14110200-14117200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:14110400-14117200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:14110400-14117400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:14110400-14117400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:14111000-14117400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:14111200-14116600	Weak transcription	K562	blood
9	chr6:14111400-14117000	Weak transcription	GM12878-XiMat	blood
10	chr6:14114400-14117400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:14114400-14117400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:14115000-14117400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:14115200-14117400	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search: