Variant report

Variant	rs73724053
Chromosome Location	chr6:14082430-14082431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14081657..14083215-chr6:14155211..14157901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238987	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10080702	1.00[EUR][1000 genomes]
rs10080734	1.00[EUR][1000 genomes]
rs10484346	1.00[EUR][1000 genomes]
rs1192053	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55875628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs57376077	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs58587778	1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs60371731	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61291802	1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73373532	1.00[EUR][1000 genomes]
rs73373534	1.00[EUR][1000 genomes]
rs73726042	1.00[EUR][1000 genomes]
rs73726044	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs9464655	1.00[EUR][1000 genomes]
rs9464656	1.00[EUR][1000 genomes]
rs9464658	1.00[EUR][1000 genomes]
rs9476487	1.00[EUR][1000 genomes]
rs9476502	1.00[EUR][1000 genomes]
rs9476503	1.00[EUR][1000 genomes]
rs9476505	1.00[EUR][1000 genomes]
rs9476506	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv527420	chr6:14064273-14088302	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14069400-14089000	Weak transcription	Esophagus	oesophagus
2	chr6:14075800-14088400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:14076000-14086400	Weak transcription	Right Atrium	heart
4	chr6:14077800-14085000	Weak transcription	GM12878-XiMat	blood
5	chr6:14080000-14082600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:14080400-14085600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:14080400-14085600	Weak transcription	NHEK	skin
8	chr6:14080400-14086000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:14080400-14087200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:14080600-14088200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:14080600-14088800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:14080600-14089000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:14082000-14083800	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:14082400-14083800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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