Variant report

Variant	rs58587778
Chromosome Location	chr6:13881762-13881763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10484346	1.00[EUR][1000 genomes]
rs1192053	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874314	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55694338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs55875628	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs56820870	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57376077	1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58191581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs58548280	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58618044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58930299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457086	1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	1.00[EUR][1000 genomes]
rs60299276	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60371731	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61417318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6921513	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940950	1.00[EUR][1000 genomes]
rs73360454	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs73723777	1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73723801	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73724053	1.00[EUR][1000 genomes]
rs73726004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726032	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726035	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726044	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs7759397	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9476487	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420238	chr6:13880473-13885771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13874800-13881800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:13880200-13882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:13880400-13882000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:13881000-13882400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:13881400-13882400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:13881400-13882600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:13881400-13882600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:13881600-13882200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:13881600-13882400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:13881600-13882600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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