Variant report

Variant	rs16874314
Chromosome Location	chr6:13766852-13766853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13710677..13712820-chr6:13763898..13768186,3	K562	blood:
2	chr6:13624693..13626575-chr6:13765177..13767665,2	K562	blood:
3	chr6:13750883..13753815-chr6:13765180..13768175,2	K562	blood:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1192053	1.00[EUR][1000 genomes]
rs11965206	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs55694338	1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	1.00[EUR][1000 genomes]
rs56785198	1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs56820870	1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	1.00[EUR][1000 genomes]
rs58191581	1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs58548280	1.00[EUR][1000 genomes]
rs58587778	1.00[EUR][1000 genomes]
rs58618044	1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	1.00[EUR][1000 genomes]
rs58930299	1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	1.00[EUR][1000 genomes]
rs59457086	1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	1.00[EUR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61417318	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6920103	1.00[EUR][1000 genomes]
rs6921389	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6921513	1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6924902	0.81[YRI][hapmap]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6935424	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940337	1.00[ASW][hapmap];0.92[LWK][hapmap];0.82[YRI][hapmap]
rs6940950	1.00[EUR][1000 genomes]
rs73360454	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73723765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73723777	1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	1.00[EUR][1000 genomes]
rs73723801	1.00[EUR][1000 genomes]
rs73726004	1.00[EUR][1000 genomes]
rs73726007	1.00[EUR][1000 genomes]
rs73726009	1.00[EUR][1000 genomes]
rs73726032	1.00[EUR][1000 genomes]
rs73726035	1.00[EUR][1000 genomes]
rs73726042	1.00[EUR][1000 genomes]
rs73726044	1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7759397	1.00[EUR][1000 genomes]
rs7759532	1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13762000-13767600	Weak transcription	Right Ventricle	heart
2	chr6:13763000-13767400	Weak transcription	Ovary	ovary
3	chr6:13763000-13767600	Weak transcription	Aorta	Aorta
4	chr6:13763000-13767600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13763200-13767400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:13763200-13767600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:13763200-13767600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:13763400-13767600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:13763400-13767600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:13763400-13767600	Weak transcription	Fetal Lung	lung
11	chr6:13763600-13767400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:13763800-13768000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:13764000-13767600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:13764200-13767400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:13764200-13767600	Weak transcription	Primary T cells from cord blood	blood
16	chr6:13764400-13767400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:13764400-13767600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:13764400-13767600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:13764400-13767600	Weak transcription	Primary B cells from cord blood	blood
20	chr6:13764400-13767600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:13764400-13768200	Enhancers	Dnd41	blood
22	chr6:13764600-13767400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:13764600-13767600	Weak transcription	Lung	lung
24	chr6:13764600-13767800	Weak transcription	Pancreas	Pancrea
25	chr6:13764600-13768600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:13764800-13767400	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:13765400-13767600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:13765800-13767000	Enhancers	HMEC	breast
29	chr6:13765800-13767400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:13765800-13767400	Enhancers	HSMMtube	muscle
31	chr6:13765800-13767600	Enhancers	HSMM	muscle
32	chr6:13765800-13768800	Enhancers	Fetal Thymus	thymus
33	chr6:13766000-13767000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:13766000-13767000	Enhancers	K562	blood
35	chr6:13766000-13767200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:13766000-13767400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:13766000-13767400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:13766000-13767400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:13766000-13767400	Enhancers	Fetal Heart	heart
40	chr6:13766000-13767400	Enhancers	Osteobl	bone
41	chr6:13766000-13767600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:13766000-13767600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:13766000-13767600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:13766000-13767600	Enhancers	NH-A	brain
45	chr6:13766000-13768200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:13766000-13768200	Enhancers	Placenta	Placenta
47	chr6:13766200-13767400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr6:13766200-13767400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:13766200-13767400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr6:13766200-13767600	Enhancers	Primary hematopoietic stem cells	blood

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