Variant report

Variant	rs7759397
Chromosome Location	chr6:13874090-13874091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13865780..13870823-chr6:13871256..13876608,7	MCF-7	breast:
2	chr6:13812945..13816149-chr6:13872114..13877655,8	MCF-7	breast:
3	chr6:13874090..13874874-chr6:14066795..14067659,3	K562	blood:
4	chr6:13872481..13874307-chr6:13882268..13884825,2	K562	blood:
5	chr6:13847131..13847657-chr6:13873693..13874291,2	K562	blood:
6	chr6:13711607..13713134-chr6:13872489..13874255,2	MCF-7	breast:
7	chr6:13812471..13815841-chr6:13872539..13875076,5	MCF-7	breast:
8	chr6:13795311..13796160-chr6:13873802..13874794,4	MCF-7	breast:
9	chr6:13814061..13814802-chr6:13873658..13874479,3	MCF-7	breast:
10	chr6:13710997..13713302-chr6:13872875..13875469,2	MCF-7	breast:
11	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:
12	chr6:13796697..13799151-chr6:13873645..13875272,3	MCF-7	breast:
13	chr6:13849255..13851756-chr6:13872753..13875703,2	K562	blood:
14	chr6:13872400..13875696-chr6:13875999..13878968,3	MCF-7	breast:
15	chr6:13796616..13797752-chr6:13874024..13874654,3	MCF-7	breast:
16	chr6:13873864..13874605-chr6:14067125..14067679,2	MCF-7	breast:
17	chr6:13873712..13874564-chr6:13909035..13909823,2	K562	blood:
18	chr6:13872608..13875601-chr6:13884105..13886599,2	MCF-7	breast:
19	chr6:13873339..13874341-chr6:14046478..14047312,3	MCF-7	breast:
20	chr6:13865916..13870763-chr6:13872402..13875554,5	MCF-7	breast:
21	chr6:13873516..13875377-chr6:14063760..14065497,2	K562	blood:
22	chr20:52559951..52560586-chr6:13874016..13874570,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10484346	1.00[EUR][1000 genomes]
rs1192053	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874314	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55694338	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs56785198	1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs56820870	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58191581	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs58548280	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58587778	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58618044	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58930299	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457086	1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	1.00[EUR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61417318	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6920103	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6921513	1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940950	1.00[EUR][1000 genomes]
rs73360454	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs73723777	1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73723801	1.00[EUR][1000 genomes]
rs73726004	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726007	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726009	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726032	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726035	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73726042	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726044	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs7759532	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13872600-13874600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:13872800-13874200	Active TSS	Colon Smooth Muscle	Colon
3	chr6:13873200-13874800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr6:13873200-13874800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:13873400-13874400	Active TSS	Fetal Kidney	kidney
6	chr6:13873400-13874400	Enhancers	Spleen	Spleen
7	chr6:13873400-13874600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:13873400-13874600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:13873400-13874800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:13873400-13874800	Enhancers	Fetal Brain Male	brain
11	chr6:13873600-13874200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr6:13873600-13874200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:13873600-13874200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:13873600-13874200	Active TSS	Fetal Brain Female	brain
15	chr6:13873600-13874200	Active TSS	Rectal Smooth Muscle	rectum
16	chr6:13873600-13874400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:13873600-13874400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:13873600-13874400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:13873600-13874400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:13873600-13874400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:13873600-13874400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr6:13873600-13874400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:13873600-13874400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:13873600-13874400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:13873600-13874400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:13873600-13874400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:13873600-13874400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:13873600-13874400	Active TSS	Fetal Lung	lung
29	chr6:13873600-13874400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr6:13873600-13874400	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr6:13873600-13874400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr6:13873600-13874400	Flanking Active TSS	HMEC	breast
33	chr6:13873600-13874600	Active TSS	H9 Cell Line	embryonic stem cell
34	chr6:13873600-13874600	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr6:13873600-13874600	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr6:13873600-13874600	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr6:13873600-13874600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr6:13873600-13874600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:13873600-13874600	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr6:13873600-13874600	Flanking Active TSS	Liver	Liver
41	chr6:13873600-13874600	Active TSS	Fetal Intestine Small	intestine
42	chr6:13873600-13874600	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr6:13873600-13874600	Flanking Active TSS	Placenta	Placenta
44	chr6:13873600-13874600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
45	chr6:13873600-13874600	Flanking Active TSS	Fetal Thymus	thymus
46	chr6:13873600-13874600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr6:13873600-13874600	Flanking Bivalent TSS/Enh	HepG2	liver
48	chr6:13873600-13874600	Flanking Active TSS	NHEK	skin
49	chr6:13873600-13874800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
50	chr6:13873600-13874800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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