Variant report

Variant	rs73726035
Chromosome Location	chr6:13876239-13876240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13865780..13870823-chr6:13871256..13876608,7	MCF-7	breast:
2	chr6:13812945..13816149-chr6:13872114..13877655,8	MCF-7	breast:
3	chr6:13573924..13575814-chr6:13875082..13877338,2	K562	blood:
4	chr6:13819320..13820968-chr6:13875542..13878125,2	K562	blood:
5	chr6:13872400..13875696-chr6:13875999..13878968,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10484346	1.00[EUR][1000 genomes]
rs1192053	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874314	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55694338	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs56820870	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58191581	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs58548280	1.00[EUR][1000 genomes]
rs58587778	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58618044	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58930299	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457086	1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	1.00[EUR][1000 genomes]
rs60299276	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61417318	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6921513	1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940950	1.00[EUR][1000 genomes]
rs73360454	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs73723777	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73723801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726004	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726007	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726009	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726032	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726042	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726044	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs7759397	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7759532	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13874400-13877200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:13874600-13877200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:13874600-13877200	Weak transcription	NH-A	brain
4	chr6:13874600-13877200	Weak transcription	Osteobl	bone
5	chr6:13874600-13877400	Weak transcription	HMEC	breast
6	chr6:13874600-13878600	Weak transcription	Esophagus	oesophagus
7	chr6:13874800-13877000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:13874800-13877200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:13874800-13877200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:13874800-13881800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:13875000-13877200	Weak transcription	K562	blood
12	chr6:13875000-13880400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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