Variant report
| Variant | rs58884133 |
|---|---|
| Chromosome Location | chr6:13832792-13832793 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:13828047..13830168-chr6:13832673..13834821,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:90)
| rs_ID | r2[population] |
|---|---|
| rs1192053 | 1.00[EUR][1000 genomes] |
| rs16874314 | 1.00[EUR][1000 genomes] |
| rs16874365 | 1.00[EUR][1000 genomes] |
| rs17409796 | 1.00[EUR][1000 genomes] |
| rs2009137 | 1.00[EUR][1000 genomes] |
| rs55694338 | 1.00[EUR][1000 genomes] |
| rs55825143 | 1.00[EUR][1000 genomes] |
| rs56075825 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56132468 | 1.00[EUR][1000 genomes] |
| rs56785198 | 1.00[EUR][1000 genomes] |
| rs56787533 | 1.00[EUR][1000 genomes] |
| rs56820870 | 1.00[EUR][1000 genomes] |
| rs57707835 | 1.00[EUR][1000 genomes] |
| rs57891360 | 1.00[EUR][1000 genomes] |
| rs57916848 | 1.00[EUR][1000 genomes] |
| rs58191581 | 1.00[EUR][1000 genomes] |
| rs58416076 | 1.00[EUR][1000 genomes] |
| rs58548280 | 1.00[EUR][1000 genomes] |
| rs58587778 | 1.00[EUR][1000 genomes] |
| rs58618044 | 1.00[EUR][1000 genomes] |
| rs58736051 | 1.00[EUR][1000 genomes] |
| rs58793310 | 1.00[EUR][1000 genomes] |
| rs58864192 | 1.00[EUR][1000 genomes] |
| rs58883873 | 1.00[EUR][1000 genomes] |
| rs58920414 | 1.00[EUR][1000 genomes] |
| rs58930299 | 1.00[EUR][1000 genomes] |
| rs59177919 | 1.00[EUR][1000 genomes] |
| rs59297313 | 1.00[EUR][1000 genomes] |
| rs59442894 | 1.00[EUR][1000 genomes] |
| rs59457086 | 1.00[EUR][1000 genomes] |
| rs59595029 | 1.00[EUR][1000 genomes] |
| rs59777177 | 1.00[EUR][1000 genomes] |
| rs59928993 | 1.00[EUR][1000 genomes] |
| rs60194373 | 1.00[EUR][1000 genomes] |
| rs60317071 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60379998 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60692139 | 1.00[EUR][1000 genomes] |
| rs60744650 | 1.00[EUR][1000 genomes] |
| rs61343047 | 1.00[EUR][1000 genomes] |
| rs61417318 | 1.00[EUR][1000 genomes] |
| rs61578549 | 1.00[EUR][1000 genomes] |
| rs6902171 | 1.00[EUR][1000 genomes] |
| rs6902522 | 1.00[EUR][1000 genomes] |
| rs6911761 | 1.00[EUR][1000 genomes] |
| rs6911899 | 1.00[EUR][1000 genomes] |
| rs6912245 | 1.00[EUR][1000 genomes] |
| rs6915720 | 1.00[EUR][1000 genomes] |
| rs6916720 | 1.00[EUR][1000 genomes] |
| rs6920103 | 1.00[EUR][1000 genomes] |
| rs6921389 | 1.00[EUR][1000 genomes] |
| rs6921513 | 1.00[EUR][1000 genomes] |
| rs6921779 | 1.00[EUR][1000 genomes] |
| rs6923370 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6925050 | 1.00[EUR][1000 genomes] |
| rs6925589 | 1.00[EUR][1000 genomes] |
| rs6934078 | 1.00[EUR][1000 genomes] |
| rs6935424 | 1.00[EUR][1000 genomes] |
| rs6938952 | 1.00[EUR][1000 genomes] |
| rs6938981 | 1.00[EUR][1000 genomes] |
| rs6939113 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6939150 | 1.00[EUR][1000 genomes] |
| rs6939346 | 1.00[EUR][1000 genomes] |
| rs6940950 | 1.00[EUR][1000 genomes] |
| rs73360454 | 1.00[EUR][1000 genomes] |
| rs73360474 | 1.00[EUR][1000 genomes] |
| rs73723765 | 1.00[EUR][1000 genomes] |
| rs73723777 | 1.00[EUR][1000 genomes] |
| rs73723781 | 1.00[EUR][1000 genomes] |
| rs73723782 | 1.00[EUR][1000 genomes] |
| rs73723783 | 1.00[EUR][1000 genomes] |
| rs73723784 | 1.00[EUR][1000 genomes] |
| rs73723789 | 1.00[EUR][1000 genomes] |
| rs73723794 | 1.00[EUR][1000 genomes] |
| rs73723795 | 1.00[EUR][1000 genomes] |
| rs73723797 | 1.00[EUR][1000 genomes] |
| rs73723798 | 1.00[EUR][1000 genomes] |
| rs73723801 | 1.00[EUR][1000 genomes] |
| rs73726004 | 1.00[EUR][1000 genomes] |
| rs73726007 | 1.00[EUR][1000 genomes] |
| rs73726009 | 1.00[EUR][1000 genomes] |
| rs73726032 | 1.00[EUR][1000 genomes] |
| rs73726035 | 1.00[EUR][1000 genomes] |
| rs73726042 | 1.00[EUR][1000 genomes] |
| rs73726044 | 1.00[EUR][1000 genomes] |
| rs7748792 | 1.00[EUR][1000 genomes] |
| rs7759397 | 1.00[EUR][1000 genomes] |
| rs7759532 | 1.00[EUR][1000 genomes] |
| rs7764951 | 1.00[EUR][1000 genomes] |
| rs7772368 | 1.00[EUR][1000 genomes] |
| rs9464199 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:13832200-13833400 | Weak transcription | GM12878-XiMat | blood |
