Variant report

Variant	rs35360116
Chromosome Location	chr6:14130325-14130326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:14129434..14130330-chr6:14144987..14145814,2	MCF-7	breast:
2	chr6:14129974..14132579-chr6:14528172..14529911,2	K562	blood:
3	chr6:14124100..14125656-chr6:14128035..14130446,2	MCF-7	breast:
4	chr6:14129400..14130327-chr6:14661513..14662249,2	K562	blood:
5	chr6:14129959..14130942-chr6:14208170..14209134,2	K562	blood:
6	chr6:14109682..14112094-chr6:14128047..14131236,3	K562	blood:
7	chr6:14129438..14130388-chr6:14144577..14145483,5	K562	blood:
8	chr6:14128990..14131969-chr6:14144322..14146425,2	K562	blood:

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	0.93[EUR][1000 genomes]
rs13205148	0.93[EUR][1000 genomes]
rs13208593	0.89[EUR][1000 genomes]
rs2010219	0.89[EUR][1000 genomes]
rs28384442	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34028524	0.93[EUR][1000 genomes]
rs34228221	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35118414	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35293970	0.89[EUR][1000 genomes]
rs3734666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58108489	0.93[EUR][1000 genomes]
rs59407943	0.93[EUR][1000 genomes]
rs59545453	0.89[EUR][1000 genomes]
rs61391899	0.93[EUR][1000 genomes]
rs6933861	0.89[EUR][1000 genomes]
rs71562496	0.93[EUR][1000 genomes]
rs71562497	0.89[EUR][1000 genomes]
rs71562498	0.93[EUR][1000 genomes]
rs71562501	0.86[EUR][1000 genomes]
rs71562502	0.89[EUR][1000 genomes]
rs71564303	0.89[EUR][1000 genomes]
rs9476497	0.89[EUR][1000 genomes]
rs9476498	0.89[EUR][1000 genomes]
rs9476499	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14118600-14134600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:14119000-14131600	Weak transcription	Lung	lung
3	chr6:14119000-14134600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:14119000-14144800	Weak transcription	Left Ventricle	heart
5	chr6:14119400-14130400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:14119400-14131600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:14119400-14133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:14119400-14135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:14119600-14134600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:14119800-14134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:14120800-14134800	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr6:14122600-14131400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:14122600-14134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:14124600-14131400	Genic enhancers	Primary B cells from cord blood	blood
15	chr6:14124600-14132800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:14124600-14141400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:14124800-14131600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:14125000-14132200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:14126200-14131200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:14126400-14137000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:14127200-14130400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:14127400-14131600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:14127600-14130600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:14127800-14130400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:14127800-14130400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:14127800-14130400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:14127800-14130600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:14128000-14130600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:14128000-14130600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:14128000-14131600	Enhancers	Fetal Lung	lung
31	chr6:14128000-14135400	Weak transcription	Fetal Brain Female	brain
32	chr6:14128200-14130400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:14128200-14131200	Enhancers	K562	blood
34	chr6:14128400-14130400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:14128400-14130800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:14128400-14131000	Enhancers	Fetal Thymus	thymus
37	chr6:14128400-14131200	Enhancers	Fetal Muscle Leg	muscle
38	chr6:14128600-14130400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:14128600-14132000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:14128600-14132800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:14128600-14134400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr6:14128800-14131400	Weak transcription	Dnd41	blood
43	chr6:14128800-14133400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:14128800-14135400	Weak transcription	Ovary	ovary
45	chr6:14129200-14132600	Weak transcription	Brain Germinal Matrix	brain
46	chr6:14129400-14130400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:14129400-14130400	Enhancers	Brain Anterior Caudate	brain
48	chr6:14129400-14130600	Enhancers	Fetal Intestine Small	intestine
49	chr6:14129400-14130800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:14129400-14131000	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links