Variant report

Variant	rs58108489
Chromosome Location	chr6:14095394-14095395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14090122..14092957-chr6:14095138..14097439,3	K562	blood:
2	chr6:14095394..14098296-chr6:14116784..14119430,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112149	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205148	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208593	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384442	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34028524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118414	0.85[EUR][1000 genomes]
rs35293970	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360116	0.93[EUR][1000 genomes]
rs3734666	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59407943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545453	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562496	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562498	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562501	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562502	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564303	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476497	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476498	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14088600-14103400	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:14091400-14099800	Enhancers	Primary B cells from cord blood	blood
3	chr6:14092400-14101200	Weak transcription	Adipose Nuclei	Adipose
4	chr6:14093000-14095600	Enhancers	Hela-S3	cervix
5	chr6:14093400-14096400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:14093600-14096800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:14093800-14095400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:14094000-14096600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:14094000-14100200	Weak transcription	Spleen	Spleen
10	chr6:14094400-14095400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:14095000-14095400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:14095000-14095600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:14095000-14100400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:14095200-14095400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:14095200-14095400	Enhancers	Brain Anterior Caudate	brain
16	chr6:14095200-14095800	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:14095200-14096600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:14095200-14100200	Weak transcription	Monocytes-CD14+_RO01746	blood

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