Variant report

Variant	rs34228221
Chromosome Location	chr6:14113987-14113988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14112824..14115645-chr6:14117420..14120304,3	MCF-7	breast:
2	chr6:14112142..14114989-chr6:14116943..14119067,4	K562	blood:
3	chr6:14107830..14114797-chr6:14115908..14119067,6	K562	blood:
4	chr6:14110518..14112309-chr6:14112614..14114768,2	K562	blood:
5	chr6:14091013..14092925-chr6:14113738..14115849,2	K562	blood:

Variant related genes	Relation type
ENSG00000112149	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208593	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384442	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34028524	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118414	0.85[EUR][1000 genomes]
rs35293970	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360116	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3734666	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58108489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59407943	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545453	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562498	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562501	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562502	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564303	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476498	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14110000-14117200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:14110200-14117000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:14110200-14117200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:14110400-14117200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:14110400-14117400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:14110400-14117400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:14111000-14117400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:14111200-14116600	Weak transcription	K562	blood
9	chr6:14111400-14117000	Weak transcription	GM12878-XiMat	blood
10	chr6:14113400-14114400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:14113800-14114400	Enhancers	Primary neutrophils fromperipheralblood	blood

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