Variant report

Variant	rs35118414
Chromosome Location	chr6:14131854-14131855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14131069..14133654-chr6:14209520..14211677,3	MCF-7	breast:
2	chr6:14129974..14132579-chr6:14528172..14529911,2	K562	blood:
3	chr6:14128990..14131969-chr6:14144322..14146425,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13197082	0.85[EUR][1000 genomes]
rs13205148	0.85[EUR][1000 genomes]
rs13208593	0.82[EUR][1000 genomes]
rs2010219	0.82[EUR][1000 genomes]
rs28384442	0.87[ASN][1000 genomes]
rs34028524	0.85[EUR][1000 genomes]
rs34228221	0.85[EUR][1000 genomes]
rs35293970	0.82[EUR][1000 genomes]
rs35360116	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3734666	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58108489	0.85[EUR][1000 genomes]
rs59407943	0.85[EUR][1000 genomes]
rs59545453	0.81[EUR][1000 genomes]
rs61391899	0.85[EUR][1000 genomes]
rs6933861	0.82[EUR][1000 genomes]
rs71562496	0.85[EUR][1000 genomes]
rs71562497	0.82[EUR][1000 genomes]
rs71562498	0.85[EUR][1000 genomes]
rs71562502	0.82[EUR][1000 genomes]
rs71564303	0.82[EUR][1000 genomes]
rs9476497	0.82[EUR][1000 genomes]
rs9476498	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14118600-14134600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:14119000-14134600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:14119000-14144800	Weak transcription	Left Ventricle	heart
4	chr6:14119400-14133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:14119400-14135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:14119600-14134600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:14119800-14134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:14120800-14134800	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr6:14122600-14134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:14124600-14132800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:14124600-14141400	Weak transcription	Brain Substantia Nigra	brain
12	chr6:14125000-14132200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:14126400-14137000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:14128000-14135400	Weak transcription	Fetal Brain Female	brain
15	chr6:14128600-14132000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:14128600-14132800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:14128600-14134400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:14128800-14133400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:14128800-14135400	Weak transcription	Ovary	ovary
20	chr6:14129200-14132600	Weak transcription	Brain Germinal Matrix	brain
21	chr6:14129600-14134400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:14129600-14134600	Enhancers	Fetal Intestine Large	intestine
23	chr6:14129600-14134600	Weak transcription	Thymus	Thymus
24	chr6:14129800-14134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:14129800-14136400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:14130000-14134600	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:14130200-14132000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:14130200-14133000	Weak transcription	Fetal Stomach	stomach
29	chr6:14130200-14134600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:14130200-14134800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:14130200-14134800	Weak transcription	Right Ventricle	heart
32	chr6:14130200-14137800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:14130200-14140800	Weak transcription	Fetal Kidney	kidney
34	chr6:14130200-14141400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:14130200-14141400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:14130200-14142600	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:14130200-14143200	Weak transcription	Fetal Brain Male	brain
38	chr6:14130400-14133000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:14130400-14133200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:14130400-14134000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:14130400-14134200	Weak transcription	Brain Anterior Caudate	brain
42	chr6:14130400-14134400	Strong transcription	GM12878-XiMat	blood
43	chr6:14130400-14134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:14130400-14134600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:14130400-14135000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:14130400-14137400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:14130400-14137400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:14130400-14137600	Weak transcription	Colonic Mucosa	Colon
49	chr6:14130400-14141400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:14130400-14141400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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