Variant report

Variant	rs6138336
Chromosome Location	chr20:24588391-24588392
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1997870	0.86[EUR][1000 genomes]
rs6132745	1.00[EUR][1000 genomes]
rs6132754	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24581800-24590600	Weak transcription	Brain Anterior Caudate	brain
2	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24584400-24591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
5	chr20:24585200-24591000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:24585800-24590800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24586000-24590800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24586800-24590000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr20:24587000-24590400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr20:24587000-24590800	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:24587000-24591000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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