Variant report

Variant	rs61386309
Chromosome Location	chr2:169634258-169634259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:169630763..169636990-chr2:169638094..169645299,10	K562	blood:
2	chr2:169632772..169636827-chr2:169642052..169645299,4	K562	blood:
3	chr2:169622048..169624666-chr2:169632656..169634335,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227617	Chromatin interaction
ENSG00000163072	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10197317	0.89[ASN][1000 genomes]
rs1063729	0.87[ASN][1000 genomes]
rs12692887	0.89[ASN][1000 genomes]
rs16855886	0.81[ASN][1000 genomes]
rs3732030	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57492979	0.81[ASN][1000 genomes]
rs57805112	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9287901	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169597200-169635800	Weak transcription	Ovary	ovary
2	chr2:169609200-169636400	Weak transcription	Lung	lung
3	chr2:169610800-169637400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:169611200-169636600	Weak transcription	HepG2	liver
5	chr2:169622200-169641400	Weak transcription	Small Intestine	intestine
6	chr2:169625600-169635400	Weak transcription	Fetal Stomach	stomach
7	chr2:169626800-169641800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr2:169627800-169636600	Weak transcription	Fetal Kidney	kidney
9	chr2:169628000-169637000	Weak transcription	Hela-S3	cervix
10	chr2:169631000-169636400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:169631000-169637600	Weak transcription	Brain Germinal Matrix	brain
12	chr2:169631200-169637600	Weak transcription	Fetal Heart	heart
13	chr2:169632600-169637000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:169632800-169634400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:169632800-169636800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:169632800-169636800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:169632800-169637800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:169632800-169638000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:169633000-169634800	Weak transcription	Primary T cells from cord blood	blood
20	chr2:169634000-169637400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:169634200-169635800	Weak transcription	Pancreas	Pancrea
22	chr2:169634200-169637600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:169634200-169643000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links