Variant report

Variant	rs16855886
Chromosome Location	chr2:169647435-169647436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1063729	0.82[CHB][hapmap]
rs16855794	0.85[CEU][hapmap]
rs16855893	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17198917	0.85[CEU][hapmap]
rs3732030	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs3843327	0.82[CHB][hapmap]
rs57492979	0.97[ASN][1000 genomes]
rs57966954	0.95[ASN][1000 genomes]
rs61386309	0.81[ASN][1000 genomes]
rs7584527	0.82[CHB][hapmap]
rs9789605	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169638200-169654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:169645200-169656000	Weak transcription	Gastric	stomach
3	chr2:169647000-169650200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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