Variant report

Variant	rs16855893
Chromosome Location	chr2:169652647-169652648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1063729	0.82[CHB][hapmap]
rs16855886	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3732030	0.91[CHB][hapmap]
rs3843327	0.82[CHB][hapmap]
rs57492979	0.90[ASN][1000 genomes]
rs57805112	0.83[ASN][1000 genomes]
rs57966954	0.88[ASN][1000 genomes]
rs7584527	0.82[CHB][hapmap]
rs9789605	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169638200-169654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:169645200-169656000	Weak transcription	Gastric	stomach
3	chr2:169652000-169659000	Weak transcription	Fetal Kidney	kidney
4	chr2:169652200-169658800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:169652400-169657200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:169652600-169652800	Enhancers	Placenta	Placenta
7	chr2:169652600-169652800	Enhancers	Lung	lung
8	chr2:169652600-169653000	Enhancers	Esophagus	oesophagus
9	chr2:169652600-169653000	Enhancers	Ovary	ovary
10	chr2:169652600-169653000	Enhancers	Pancreas	Pancrea
11	chr2:169652600-169653000	Enhancers	Right Ventricle	heart
12	chr2:169652600-169653200	Enhancers	Right Atrium	heart
13	chr2:169652600-169653400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr2:169652600-169653600	Enhancers	Adipose Nuclei	Adipose
15	chr2:169652600-169653600	Enhancers	HUVEC	blood vessel
16	chr2:169652600-169654200	Flanking Active TSS	K562	blood
17	chr2:169652600-169656200	Enhancers	Spleen	Spleen
18	chr2:169652600-169656800	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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