Variant report

Variant	rs57805112
Chromosome Location	chr2:169637700-169637701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169637005..169639771-chr2:169649068..169651756,2	K562	blood:
2	chr2:169637005..169639771-chr2:169648847..169651756,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10197317	0.95[ASN][1000 genomes]
rs1063729	0.93[ASN][1000 genomes]
rs12692887	0.95[ASN][1000 genomes]
rs16855893	0.83[ASN][1000 genomes]
rs3732030	0.86[ASN][1000 genomes]
rs3843327	0.81[ASN][1000 genomes]
rs61386309	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6433091	0.83[ASN][1000 genomes]
rs9287901	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169622200-169641400	Weak transcription	Small Intestine	intestine
2	chr2:169626800-169641800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:169632800-169637800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:169632800-169638000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:169634200-169643000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:169636400-169639400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:169636600-169637800	Enhancers	A549	lung
8	chr2:169636600-169638000	Enhancers	Fetal Lung	lung
9	chr2:169636600-169638200	Enhancers	HepG2	liver
10	chr2:169636600-169638800	Enhancers	Fetal Kidney	kidney
11	chr2:169636800-169638000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr2:169636800-169638200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:169636800-169638200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:169636800-169638800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:169636800-169640200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr2:169637000-169637800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:169637000-169637800	Enhancers	Liver	Liver
18	chr2:169637000-169637800	Enhancers	Hela-S3	cervix
19	chr2:169637000-169638400	Enhancers	Duodenum Mucosa	Duodenum
20	chr2:169637000-169638800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:169637000-169640000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:169637200-169638200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr2:169637200-169638400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr2:169637200-169638600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:169637200-169639200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:169637200-169639400	Enhancers	K562	blood
27	chr2:169637400-169638200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:169637400-169638200	Enhancers	Stomach Mucosa	stomach
29	chr2:169637400-169638400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:169637400-169638800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:169637400-169639400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:169637600-169637800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:169637600-169638200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:169637600-169638400	Enhancers	Brain Germinal Matrix	brain
35	chr2:169637600-169638600	Weak transcription	Pancreas	Pancrea
36	chr2:169637600-169638800	Enhancers	Fetal Heart	heart
37	chr2:169637600-169639200	Weak transcription	Lung	lung

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