Variant report

Variant	rs7584527
Chromosome Location	chr2:169602748-169602749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10197317	0.84[ASN][1000 genomes]
rs1063729	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs11904804	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12692887	0.84[ASN][1000 genomes]
rs16855886	0.82[CHB][hapmap]
rs16855893	0.82[CHB][hapmap]
rs2390732	0.86[YRI][hapmap]
rs3732030	0.91[CHB][hapmap]
rs3843327	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3914919	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4668103	0.81[MKK][hapmap]
rs6433090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433091	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9287901	0.86[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169577600-169606400	Weak transcription	Thymus	Thymus
3	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
4	chr2:169579600-169606000	Weak transcription	Pancreas	Pancrea
5	chr2:169579600-169610400	Weak transcription	HepG2	liver
6	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
7	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:169580800-169604200	Weak transcription	Fetal Thymus	thymus
10	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
11	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:169581200-169606400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:169586200-169607600	Weak transcription	Fetal Stomach	stomach
17	chr2:169586600-169606400	Weak transcription	GM12878-XiMat	blood
18	chr2:169587200-169606200	Weak transcription	Right Atrium	heart
19	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:169588600-169605400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:169591000-169605000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:169591200-169604600	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:169591200-169604600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr2:169591400-169605000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr2:169592200-169605000	Weak transcription	Right Ventricle	heart
26	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:169593800-169604800	Weak transcription	Brain Angular Gyrus	brain
28	chr2:169594000-169611000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:169594400-169607600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr2:169594800-169605200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:169595000-169608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:169595000-169610600	Weak transcription	HMEC	breast
33	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
34	chr2:169595200-169622800	Weak transcription	NHEK	skin
35	chr2:169595400-169604400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr2:169595400-169604400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr2:169595400-169604600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr2:169597200-169608600	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:169597200-169635800	Weak transcription	Ovary	ovary
40	chr2:169597600-169613600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:169599200-169604600	Weak transcription	Gastric	stomach
43	chr2:169599200-169607400	Weak transcription	Fetal Intestine Large	intestine
44	chr2:169599400-169605000	Weak transcription	Left Ventricle	heart
45	chr2:169599400-169605200	Weak transcription	Primary T cells from cord blood	blood
46	chr2:169599800-169604400	Weak transcription	Fetal Heart	heart
47	chr2:169600400-169603000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr2:169601000-169603800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:169601400-169605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr2:169601400-169610600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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