Variant report

Variant	rs61396080
Chromosome Location	chr2:187697713-187697714
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56940720	1.00[AMR][1000 genomes]
rs60628990	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61764172	1.00[AMR][1000 genomes]
rs61764180	1.00[AMR][1000 genomes]
rs61764185	1.00[AMR][1000 genomes]
rs6742889	1.00[ASN][1000 genomes]
rs6751116	1.00[ASN][1000 genomes]
rs73033523	1.00[AMR][1000 genomes]
rs73033526	1.00[AMR][1000 genomes]
rs73033530	1.00[AMR][1000 genomes]
rs73033534	1.00[AMR][1000 genomes]
rs73033537	1.00[AMR][1000 genomes]
rs73033547	1.00[AMR][1000 genomes]
rs73033548	1.00[AMR][1000 genomes]
rs73033561	1.00[AMR][1000 genomes]
rs73035684	1.00[AMR][1000 genomes]
rs73035691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187686400-187699000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:187696000-187700400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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