Variant report

Variant	rs73033534
Chromosome Location	chr2:187555262-187555263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56940720	1.00[AMR][1000 genomes]
rs58307002	1.00[AFR][1000 genomes]
rs60628990	1.00[AMR][1000 genomes]
rs61396080	1.00[AMR][1000 genomes]
rs61764172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61764180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61764185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033537	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033547	1.00[AMR][1000 genomes]
rs73033548	1.00[AMR][1000 genomes]
rs73033561	1.00[AMR][1000 genomes]
rs73035684	1.00[AMR][1000 genomes]
rs73035691	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187539200-187557800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:187541800-187558400	Weak transcription	Left Ventricle	heart
3	chr2:187542000-187555400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:187543400-187558200	Weak transcription	NHDF-Ad	bronchial
5	chr2:187543600-187558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:187546200-187558200	Weak transcription	Placenta	Placenta
7	chr2:187546800-187558000	Weak transcription	A549	lung
8	chr2:187554400-187558400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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