Variant report

Variant	rs73035691
Chromosome Location	chr2:187636298-187636299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56940720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60628990	1.00[AMR][1000 genomes]
rs61396080	1.00[AMR][1000 genomes]
rs61764172	1.00[AMR][1000 genomes]
rs61764180	1.00[AMR][1000 genomes]
rs61764185	1.00[AMR][1000 genomes]
rs73033523	1.00[AMR][1000 genomes]
rs73033526	1.00[AMR][1000 genomes]
rs73033530	1.00[AMR][1000 genomes]
rs73033534	1.00[AMR][1000 genomes]
rs73033537	1.00[AMR][1000 genomes]
rs73033547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3495864	chr2:187633495-187686087	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3495865	chr2:187633495-187686087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187627200-187636800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:187635000-187636800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:187636000-187637200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr2:187636000-187637200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:187636200-187636800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:187636200-187637000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:187636200-187637000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:187636200-187637000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr2:187636200-187637600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:187636200-187637600	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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