Variant report

Variant	rs61412808
Chromosome Location	chr11:66867933-66867934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66861259..66863217-chr11:66865259..66868293,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs34281447	0.83[ASN][1000 genomes]
rs35247643	0.85[ASN][1000 genomes]
rs35590263	0.83[ASN][1000 genomes]
rs35995489	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56173916	0.86[AFR][1000 genomes]
rs56973649	0.92[AFR][1000 genomes]
rs57604888	0.86[AFR][1000 genomes]
rs57946225	0.92[AFR][1000 genomes]
rs60751057	0.86[AFR][1000 genomes]
rs71457758	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71457767	0.83[ASN][1000 genomes]
rs73493529	0.97[AFR][1000 genomes]
rs73493531	0.97[AFR][1000 genomes]
rs73501797	0.86[AFR][1000 genomes]
rs73501800	0.81[AFR][1000 genomes]
rs73503907	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv975118	chr11:66862674-66874347	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66863000-66870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:66863000-66871200	Weak transcription	K562	blood
3	chr11:66866200-66868200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:66866400-66868200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr11:66866400-66868200	Enhancers	Fetal Thymus	thymus
6	chr11:66866400-66868400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:66866600-66868200	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:66866600-66871400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:66867000-66873400	Weak transcription	Right Atrium	heart
10	chr11:66867200-66868200	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:66867200-66868400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:66867400-66868000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr11:66867400-66868000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:66867400-66868000	Enhancers	Thymus	Thymus
15	chr11:66867400-66868000	Flanking Active TSS	GM12878-XiMat	blood
16	chr11:66867400-66868200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr11:66867400-66868200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr11:66867400-66868200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:66867400-66868200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr11:66867400-66868200	Enhancers	HMEC	breast
21	chr11:66867400-66868400	Enhancers	Primary T cells from cord blood	blood
22	chr11:66867400-66868400	Enhancers	Dnd41	blood
23	chr11:66867600-66868000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:66867600-66868000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:66867600-66868000	Enhancers	Spleen	Spleen
26	chr11:66867600-66868000	Enhancers	HUVEC	blood vessel
27	chr11:66867600-66868000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr11:66867600-66868200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:66867600-66868200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr11:66867600-66868200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:66867600-66868200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:66867600-66868200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:66867800-66880800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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