Variant report

Variant	rs57604888
Chromosome Location	chr11:66847219-66847220
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66846010..66851395-chr11:67007542..67013094,6	MCF-7	breast:
2	chr11:66795520..66800243-chr11:66842447..66847308,8	MCF-7	breast:
3	chr11:66845472..66847556-chr11:66849129..66851481,4	MCF-7	breast:
4	chr11:66751363..66756232-chr11:66844314..66849671,8	MCF-7	breast:
5	chr11:66845358..66847387-chr11:66887681..66889198,2	MCF-7	breast:
6	chr11:66788535..66793163-chr11:66843728..66847752,10	MCF-7	breast:
7	chr11:66844181..66847775-chr11:67079244..67082122,3	MCF-7	breast:
8	chr11:66762983..66764493-chr11:66846837..66848390,2	MCF-7	breast:
9	chr11:66843754..66847684-chr11:66886788..66890300,5	MCF-7	breast:
10	chr11:66788209..66792754-chr11:66842062..66847594,9	MCF-7	breast:
11	chr11:66622795..66624775-chr11:66845462..66847449,2	MCF-7	breast:
12	chr11:66845409..66847808-chr11:66931726..66933448,2	MCF-7	breast:
13	chr11:66845756..66848172-chr11:66890985..66894364,3	MCF-7	breast:
14	chr11:66847116..66849049-chr11:66877078..66878803,2	MCF-7	breast:
15	chr11:66845534..66847277-chr11:67139384..67140950,2	MCF-7	breast:
16	chr11:66795192..66797472-chr11:66845747..66847691,2	MCF-7	breast:
17	chr11:66797798..66801949-chr11:66843586..66847456,4	MCF-7	breast:
18	chr11:66748815..66755953-chr11:66843606..66849844,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252709	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000173621	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10160663	1.00[EUR][1000 genomes]
rs10896146	1.00[EUR][1000 genomes]
rs10896147	1.00[EUR][1000 genomes]
rs10896148	1.00[EUR][1000 genomes]
rs11227645	1.00[EUR][1000 genomes]
rs11227647	1.00[EUR][1000 genomes]
rs11227654	1.00[EUR][1000 genomes]
rs11227655	1.00[EUR][1000 genomes]
rs11227659	1.00[EUR][1000 genomes]
rs11227662	1.00[EUR][1000 genomes]
rs11227664	1.00[EUR][1000 genomes]
rs12222286	1.00[EUR][1000 genomes]
rs12270068	1.00[EUR][1000 genomes]
rs12270183	1.00[EUR][1000 genomes]
rs12273240	1.00[EUR][1000 genomes]
rs12274897	1.00[EUR][1000 genomes]
rs12275370	1.00[EUR][1000 genomes]
rs12276046	1.00[EUR][1000 genomes]
rs12277065	1.00[EUR][1000 genomes]
rs12277720	1.00[EUR][1000 genomes]
rs12279585	1.00[EUR][1000 genomes]
rs12281292	1.00[EUR][1000 genomes]
rs12281335	1.00[EUR][1000 genomes]
rs12281512	1.00[EUR][1000 genomes]
rs12282433	1.00[EUR][1000 genomes]
rs12282440	1.00[EUR][1000 genomes]
rs12284422	1.00[EUR][1000 genomes]
rs12284764	1.00[EUR][1000 genomes]
rs12284808	1.00[EUR][1000 genomes]
rs12284860	1.00[EUR][1000 genomes]
rs12285661	1.00[EUR][1000 genomes]
rs12287658	1.00[EUR][1000 genomes]
rs12288309	1.00[EUR][1000 genomes]
rs12288354	1.00[EUR][1000 genomes]
rs12290308	1.00[EUR][1000 genomes]
rs12290429	1.00[EUR][1000 genomes]
rs12292728	1.00[EUR][1000 genomes]
rs12293275	1.00[EUR][1000 genomes]
rs12788732	1.00[EUR][1000 genomes]
rs56173916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56973649	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57748654	1.00[EUR][1000 genomes]
rs57946225	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60751057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61412808	0.86[AFR][1000 genomes]
rs7109580	1.00[EUR][1000 genomes]
rs7123934	1.00[EUR][1000 genomes]
rs7128943	1.00[EUR][1000 genomes]
rs73493529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73493531	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7924894	1.00[EUR][1000 genomes]
rs7925264	1.00[EUR][1000 genomes]
rs7941982	1.00[EUR][1000 genomes]
rs7942885	1.00[EUR][1000 genomes]
rs7948985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66825200-66849200	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:66825400-66849400	Weak transcription	Ovary	ovary
3	chr11:66839400-66849400	Weak transcription	Lung	lung
4	chr11:66839400-66849400	Weak transcription	Right Atrium	heart
5	chr11:66839400-66849400	Weak transcription	Right Ventricle	heart
6	chr11:66844000-66849400	Weak transcription	Pancreas	Pancrea
7	chr11:66844800-66848000	Enhancers	Esophagus	oesophagus
8	chr11:66845400-66847400	Enhancers	HMEC	breast
9	chr11:66845800-66847800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:66846000-66849200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:66846000-66849200	Weak transcription	Gastric	stomach
12	chr11:66846000-66849400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:66846200-66847400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:66846200-66849000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:66846200-66849200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:66846200-66849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:66846200-66849400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:66846200-66849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:66846400-66849200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:66846400-66849200	Weak transcription	Colonic Mucosa	Colon
21	chr11:66846400-66849200	Weak transcription	K562	blood
22	chr11:66846400-66849400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:66846400-66849400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:66846400-66849400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:66846600-66849000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:66846600-66849200	Weak transcription	Fetal Intestine Large	intestine
27	chr11:66846600-66849200	Weak transcription	Osteobl	bone
28	chr11:66846800-66849000	Enhancers	Hela-S3	cervix
29	chr11:66846800-66849000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:66846800-66849200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:66846800-66849200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:66846800-66849200	Weak transcription	NHEK	skin
33	chr11:66846800-66849400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:66847000-66847400	Enhancers	GM12878-XiMat	blood
35	chr11:66847000-66849000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:66847000-66849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:66847000-66849000	Weak transcription	Stomach Mucosa	stomach
38	chr11:66847000-66849200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:66847000-66849200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:66847000-66849200	Weak transcription	Fetal Intestine Small	intestine
41	chr11:66847000-66849400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:66847200-66847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:66847200-66847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:66847200-66847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:66847200-66849000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:66847200-66849000	Weak transcription	Placenta	Placenta
47	chr11:66847200-66849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:66847200-66849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:66847200-66849200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:66847200-66849200	Weak transcription	Rectal Mucosa Donor 31	rectum

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