Variant report

Variant	rs10160663
Chromosome Location	chr11:66801247-66801248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66798942..66801519-chr11:66809230..66812239,4	MCF-7	breast:
2	chr11:66786143..66803039-chr11:66815769..66832347,160	MCF-7	breast:
3	chr11:66786222..66802522-chr11:66819452..66831805,83	MCF-7	breast:
4	chr11:66798443..66801569-chr11:67083608..67086293,3	MCF-7	breast:
5	chr11:66795678..66797745-chr11:66799741..66801320,2	K562	blood:
6	chr11:66797798..66801949-chr11:66843586..66847456,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173227	Chromatin interaction
ENSG00000173156	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10896146	1.00[EUR][1000 genomes]
rs10896147	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227641	0.80[ASN][1000 genomes]
rs11227645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227651	0.80[ASN][1000 genomes]
rs11227654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227655	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227656	1.00[ASN][1000 genomes]
rs11227658	0.87[ASN][1000 genomes]
rs11227659	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227660	0.93[ASN][1000 genomes]
rs11227662	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227664	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11227666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12222286	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273240	1.00[EUR][1000 genomes]
rs12274897	1.00[EUR][1000 genomes]
rs12275370	1.00[EUR][1000 genomes]
rs12276046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277065	1.00[EUR][1000 genomes]
rs12277720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281292	1.00[EUR][1000 genomes]
rs12281335	1.00[EUR][1000 genomes]
rs12281512	1.00[EUR][1000 genomes]
rs12282433	1.00[EUR][1000 genomes]
rs12282440	1.00[EUR][1000 genomes]
rs12284422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285661	1.00[EUR][1000 genomes]
rs12287658	1.00[EUR][1000 genomes]
rs12288309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288354	1.00[EUR][1000 genomes]
rs12290308	1.00[EUR][1000 genomes]
rs12290429	1.00[EUR][1000 genomes]
rs12290836	1.00[AMR][1000 genomes]
rs12290886	1.00[AMR][1000 genomes]
rs12290950	1.00[AMR][1000 genomes]
rs12292728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12788732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173916	1.00[EUR][1000 genomes]
rs56973649	1.00[EUR][1000 genomes]
rs57604888	1.00[EUR][1000 genomes]
rs57748654	1.00[EUR][1000 genomes]
rs57946225	1.00[EUR][1000 genomes]
rs60751057	1.00[EUR][1000 genomes]
rs7109580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73493529	1.00[EUR][1000 genomes]
rs73493531	1.00[EUR][1000 genomes]
rs73501797	1.00[EUR][1000 genomes]
rs73501800	1.00[EUR][1000 genomes]
rs7924894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7925264	1.00[EUR][1000 genomes]
rs7941982	1.00[EUR][1000 genomes]
rs7942885	1.00[EUR][1000 genomes]
rs7948985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
5	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv555239	chr11:66796380-66816507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
8	nsv555240	chr11:66796380-66820728	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66796400-66808400	Weak transcription	Liver	Liver
2	chr11:66797200-66802800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:66797400-66801800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:66797400-66802400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:66799200-66802200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:66799200-66802200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:66799200-66802200	Enhancers	HMEC	breast
8	chr11:66799200-66802400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:66799400-66802200	Enhancers	NHLF	lung
10	chr11:66799400-66802400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:66799400-66802400	Enhancers	HSMM	muscle
12	chr11:66799600-66802200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:66799600-66802400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:66799600-66816000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:66800200-66802400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:66800600-66801400	Flanking Active TSS	A549	lung
17	chr11:66800600-66801600	Enhancers	GM12878-XiMat	blood
18	chr11:66800600-66801600	Flanking Active TSS	Hela-S3	cervix
19	chr11:66800600-66802400	Enhancers	HSMMtube	muscle
20	chr11:66800800-66801400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:66800800-66801400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr11:66800800-66801400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:66800800-66801400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:66800800-66801400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:66800800-66801400	Enhancers	Esophagus	oesophagus
26	chr11:66800800-66801400	Enhancers	Ovary	ovary
27	chr11:66800800-66801400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
28	chr11:66800800-66801400	Flanking Active TSS	NHDF-Ad	bronchial
29	chr11:66800800-66801600	Flanking Active TSS	NHEK	skin
30	chr11:66800800-66801800	Enhancers	Brain Cingulate Gyrus	brain
31	chr11:66800800-66802400	Enhancers	Brain Anterior Caudate	brain
32	chr11:66800800-66802400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr11:66801000-66801400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:66801000-66801400	Flanking Active TSS	NH-A	brain
35	chr11:66801000-66801600	Enhancers	Adipose Nuclei	Adipose
36	chr11:66801000-66802200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:66801000-66802200	Enhancers	Brain Hippocampus Middle	brain
38	chr11:66801200-66801400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:66801200-66801400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:66801200-66801600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:66801200-66801600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:66801200-66802000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
43	chr11:66801200-66802000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr11:66801200-66802200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:66801200-66802400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:66801200-66802400	Enhancers	Placenta	Placenta
47	chr11:66801200-66802400	Enhancers	Osteobl	bone
48	chr11:66801200-66821600	Weak transcription	Brain Angular Gyrus	brain

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