Variant report

Variant	rs7942885
Chromosome Location	chr11:66793125-66793126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66789062..66792605-chr11:66793092..66798254,6	K562	blood:
2	chr11:66786143..66803039-chr11:66815769..66832347,160	MCF-7	breast:
3	chr11:66723147..66725998-chr11:66792267..66795189,3	MCF-7	breast:
4	chr11:66762811..66772502-chr11:66787021..66797000,34	MCF-7	breast:
5	chr11:66628190..66631041-chr11:66791870..66794073,2	MCF-7	breast:
6	chr11:66786222..66802522-chr11:66819452..66831805,83	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173156	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000252709	Chromatin interaction
ENSG00000173599	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10160663	1.00[EUR][1000 genomes]
rs10896146	1.00[EUR][1000 genomes]
rs10896147	1.00[EUR][1000 genomes]
rs10896148	1.00[EUR][1000 genomes]
rs11227645	1.00[EUR][1000 genomes]
rs11227647	1.00[EUR][1000 genomes]
rs11227654	1.00[EUR][1000 genomes]
rs11227655	1.00[EUR][1000 genomes]
rs11227659	1.00[EUR][1000 genomes]
rs11227662	1.00[EUR][1000 genomes]
rs11227664	1.00[EUR][1000 genomes]
rs12222286	1.00[EUR][1000 genomes]
rs12270068	1.00[EUR][1000 genomes]
rs12270183	1.00[EUR][1000 genomes]
rs12273240	1.00[EUR][1000 genomes]
rs12274897	1.00[EUR][1000 genomes]
rs12275370	1.00[EUR][1000 genomes]
rs12276046	1.00[EUR][1000 genomes]
rs12277065	1.00[EUR][1000 genomes]
rs12277720	1.00[EUR][1000 genomes]
rs12279585	1.00[EUR][1000 genomes]
rs12281292	1.00[EUR][1000 genomes]
rs12281335	1.00[EUR][1000 genomes]
rs12281512	1.00[EUR][1000 genomes]
rs12282433	1.00[EUR][1000 genomes]
rs12282440	1.00[EUR][1000 genomes]
rs12284422	1.00[EUR][1000 genomes]
rs12284764	1.00[EUR][1000 genomes]
rs12284808	1.00[EUR][1000 genomes]
rs12284860	1.00[EUR][1000 genomes]
rs12285661	1.00[EUR][1000 genomes]
rs12287658	1.00[EUR][1000 genomes]
rs12288309	1.00[EUR][1000 genomes]
rs12288354	1.00[EUR][1000 genomes]
rs12290308	1.00[EUR][1000 genomes]
rs12290429	1.00[EUR][1000 genomes]
rs12292728	1.00[EUR][1000 genomes]
rs12293275	1.00[EUR][1000 genomes]
rs12788732	1.00[EUR][1000 genomes]
rs56173916	1.00[EUR][1000 genomes]
rs56973649	1.00[EUR][1000 genomes]
rs57604888	1.00[EUR][1000 genomes]
rs57748654	1.00[EUR][1000 genomes]
rs57946225	1.00[EUR][1000 genomes]
rs60751057	1.00[EUR][1000 genomes]
rs7109580	1.00[EUR][1000 genomes]
rs7123934	1.00[EUR][1000 genomes]
rs7128943	1.00[EUR][1000 genomes]
rs73493529	1.00[EUR][1000 genomes]
rs73493531	1.00[EUR][1000 genomes]
rs73501797	1.00[EUR][1000 genomes]
rs73501800	1.00[EUR][1000 genomes]
rs7924894	1.00[EUR][1000 genomes]
rs7925264	1.00[EUR][1000 genomes]
rs7941982	1.00[EUR][1000 genomes]
rs7948985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
5	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66790000-66793200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr11:66791200-66793200	Bivalent Enhancer	Fetal Thymus	thymus
3	chr11:66791200-66793200	Flanking Active TSS	Hela-S3	cervix
4	chr11:66791400-66793200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:66791400-66793200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr11:66791400-66794400	Weak transcription	Gastric	stomach
7	chr11:66791600-66793200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr11:66791600-66793200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:66791600-66793200	Enhancers	HMEC	breast
10	chr11:66791600-66795000	Weak transcription	Esophagus	oesophagus
11	chr11:66791800-66793200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:66791800-66793200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:66792000-66793200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:66792200-66795400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:66792200-66797400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:66792400-66793200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
17	chr11:66792400-66793200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
18	chr11:66792400-66793200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:66792400-66793200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
20	chr11:66792400-66793200	Enhancers	A549	lung
21	chr11:66792400-66793600	Enhancers	Placenta	Placenta
22	chr11:66792400-66795000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:66792600-66795200	Weak transcription	Brain Angular Gyrus	brain
24	chr11:66792600-66795200	Weak transcription	Spleen	Spleen
25	chr11:66792600-66796600	Weak transcription	HSMMtube	muscle
26	chr11:66792600-66798400	Weak transcription	Pancreas	Pancrea
27	chr11:66792800-66793200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
28	chr11:66792800-66796800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:66792800-66799400	Weak transcription	Osteobl	bone
30	chr11:66793000-66793400	Bivalent Enhancer	Colonic Mucosa	Colon
31	chr11:66793000-66794400	Weak transcription	Liver	Liver
32	chr11:66793000-66795000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:66793000-66796400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links