Variant report

Variant	rs12285661
Chromosome Location	chr11:66837635-66837636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66836812..66842156-chr11:66842651..66845856,9	MCF-7	breast:
2	chr11:66836365..66838201-chr11:67082431..67085361,2	K562	blood:
3	chr11:66827365..66829183-chr11:66836201..66838843,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10160663	1.00[EUR][1000 genomes]
rs10896146	1.00[EUR][1000 genomes]
rs10896147	1.00[EUR][1000 genomes]
rs10896148	1.00[EUR][1000 genomes]
rs11227645	1.00[EUR][1000 genomes]
rs11227647	1.00[EUR][1000 genomes]
rs11227654	1.00[EUR][1000 genomes]
rs11227655	1.00[EUR][1000 genomes]
rs11227659	1.00[EUR][1000 genomes]
rs11227662	1.00[EUR][1000 genomes]
rs11227664	1.00[EUR][1000 genomes]
rs12222286	1.00[EUR][1000 genomes]
rs12270068	1.00[EUR][1000 genomes]
rs12270183	1.00[EUR][1000 genomes]
rs12273240	1.00[EUR][1000 genomes]
rs12274897	1.00[EUR][1000 genomes]
rs12275370	1.00[EUR][1000 genomes]
rs12276046	1.00[EUR][1000 genomes]
rs12277065	1.00[EUR][1000 genomes]
rs12277720	1.00[EUR][1000 genomes]
rs12279585	1.00[EUR][1000 genomes]
rs12281292	1.00[EUR][1000 genomes]
rs12281335	1.00[EUR][1000 genomes]
rs12281512	1.00[EUR][1000 genomes]
rs12282433	1.00[EUR][1000 genomes]
rs12282440	1.00[EUR][1000 genomes]
rs12284422	1.00[EUR][1000 genomes]
rs12284764	1.00[EUR][1000 genomes]
rs12284808	1.00[EUR][1000 genomes]
rs12284860	1.00[EUR][1000 genomes]
rs12287658	1.00[EUR][1000 genomes]
rs12288309	1.00[EUR][1000 genomes]
rs12288354	1.00[EUR][1000 genomes]
rs12290308	1.00[EUR][1000 genomes]
rs12290429	1.00[EUR][1000 genomes]
rs12291441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292728	1.00[EUR][1000 genomes]
rs12293275	1.00[EUR][1000 genomes]
rs12788732	1.00[EUR][1000 genomes]
rs56173916	1.00[EUR][1000 genomes]
rs56973649	1.00[EUR][1000 genomes]
rs57604888	1.00[EUR][1000 genomes]
rs57748654	1.00[EUR][1000 genomes]
rs57946225	1.00[EUR][1000 genomes]
rs60751057	1.00[EUR][1000 genomes]
rs7109580	1.00[EUR][1000 genomes]
rs7123934	1.00[EUR][1000 genomes]
rs7128943	1.00[EUR][1000 genomes]
rs73493529	1.00[EUR][1000 genomes]
rs73493531	1.00[EUR][1000 genomes]
rs73501797	1.00[EUR][1000 genomes]
rs73501800	1.00[EUR][1000 genomes]
rs7924894	1.00[EUR][1000 genomes]
rs7925264	1.00[EUR][1000 genomes]
rs7941982	1.00[EUR][1000 genomes]
rs7942885	1.00[EUR][1000 genomes]
rs7948985	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
3	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66825200-66838800	Weak transcription	Spleen	Spleen
2	chr11:66825200-66841400	Weak transcription	Aorta	Aorta
3	chr11:66825200-66849200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:66825400-66838800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:66825400-66839000	Weak transcription	Lung	lung
6	chr11:66825400-66839000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:66825400-66839200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:66825400-66849400	Weak transcription	Ovary	ovary
9	chr11:66826600-66839000	Weak transcription	Fetal Intestine Large	intestine
10	chr11:66827600-66841800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:66828000-66839000	Weak transcription	NH-A	brain
12	chr11:66828000-66845600	Weak transcription	Osteobl	bone
13	chr11:66828400-66839000	Weak transcription	Right Atrium	heart
14	chr11:66830400-66838800	Weak transcription	Pancreas	Pancrea
15	chr11:66830600-66838400	Weak transcription	A549	lung
16	chr11:66830800-66839000	Weak transcription	Stomach Mucosa	stomach
17	chr11:66831400-66844600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:66832000-66841000	Strong transcription	NHEK	skin
19	chr11:66833000-66841000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:66833800-66838800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:66833800-66841000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:66834200-66838800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:66834400-66839000	Weak transcription	Left Ventricle	heart
24	chr11:66834800-66838800	Weak transcription	Right Ventricle	heart
25	chr11:66834800-66843400	Weak transcription	Hela-S3	cervix
26	chr11:66835200-66839800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:66835800-66837800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:66835800-66837800	Weak transcription	Esophagus	oesophagus
29	chr11:66835800-66838800	Weak transcription	Gastric	stomach
30	chr11:66836000-66837800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:66836000-66838000	Weak transcription	Placenta	Placenta
32	chr11:66836000-66838800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:66836000-66838800	Weak transcription	Liver	Liver
34	chr11:66836600-66842200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:66837600-66839200	Strong transcription	Fetal Intestine Small	intestine
36	chr11:66837600-66840400	Strong transcription	HMEC	breast
37	chr11:66837600-66841000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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