Variant report

Variant	rs12277720
Chromosome Location	chr11:66764318-66764319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr11:66764284-66764870	A549	lung:	n/a	n/a
2	ZC3H11A	chr11:66764191-66764473	K562	blood:	n/a	n/a
3	USF1	chr11:66764270-66764800	A549	lung:	n/a	chr11:66764403-66764414
4	NR2F2	chr11:66764214-66765137	MCF-7	breast:	n/a	n/a
5	CEBPB	chr11:66764296-66765046	MCF-7	breast:	n/a	n/a
6	TEAD4	chr11:66764291-66764946	MCF-7	breast:	n/a	n/a
7	TCF12	chr11:66764013-66765127	MCF-7	breast:	n/a	chr11:66764585-66764595
8	EP300	chr11:66764125-66765128	MCF-7	breast:	n/a	n/a
9	EGR1	chr11:66764261-66764804	MCF-7	breast:	n/a	chr11:66764543-66764550
10	CREB1	chr11:66764315-66764738	A549	lung:	n/a	n/a
11	MAZ	chr11:66764299-66764928	IMR90	lung:	n/a	chr11:66764405-66764414 chr11:66764404-66764415 chr11:66764406-66764413 chr11:66764404-66764414 chr11:66764405-66764414 chr11:66764403-66764416
12	ELF1	chr11:66764269-66764898	MCF-7	breast:	n/a	n/a
13	FOXA2	chr11:66764282-66764789	A549	lung:	n/a	n/a
14	FOSL2	chr11:66764302-66764814	A549	lung:	n/a	chr11:66764430-66764441
15	NR3C1	chr11:66764292-66764819	A549	lung:	n/a	n/a
16	FOXA1	chr11:66764311-66764787	HepG2	liver:	n/a	n/a
17	TEAD4	chr11:66764291-66764843	A549	lung:	n/a	n/a
18	USF1	chr11:66764276-66764612	A549	lung:	n/a	chr11:66764403-66764414
19	RAD21	chr11:66764277-66764937	MCF-7	breast:	n/a	n/a
20	MAX	chr11:66764159-66765091	MCF-7	breast:	n/a	chr11:66764405-66764414 chr11:66764404-66764415 chr11:66764406-66764413 chr11:66764404-66764414 chr11:66764405-66764414 chr11:66764403-66764416
21	EP300	chr11:66764246-66764893	A549	lung:	n/a	n/a
22	EP300	chr11:66764294-66764777	HepG2	liver:	n/a	n/a
23	GATA3	chr11:66764301-66765136	MCF-7	breast:	n/a	n/a
24	EP300	chr11:66764190-66764953	A549	lung:	n/a	n/a
25	MYC	chr11:66764306-66764797	MCF-7	breast:	n/a	chr11:66764405-66764414 chr11:66764404-66764415 chr11:66764406-66764413 chr11:66764404-66764414 chr11:66764405-66764414 chr11:66764403-66764416
26	TEAD4	chr11:66764184-66764847	HepG2	liver:	n/a	n/a
27	MAX	chr11:66764124-66764999	MCF-7	breast:	n/a	chr11:66764405-66764414 chr11:66764404-66764415 chr11:66764406-66764413 chr11:66764404-66764414 chr11:66764405-66764414 chr11:66764403-66764416
28	TCF12	chr11:66764297-66765130	MCF-7	breast:	n/a	chr11:66764585-66764595
29	GATA3	chr11:66764264-66765128	MCF-7	breast:	n/a	n/a
30	MAX	chr11:66764137-66764879	A549	lung:	n/a	chr11:66764405-66764414 chr11:66764404-66764415 chr11:66764406-66764413 chr11:66764404-66764414 chr11:66764405-66764414 chr11:66764403-66764416
31	RAD21	chr11:66764271-66765043	MCF-7	breast:	n/a	chr11:66765008-66765017
32	SP1	chr11:66764195-66764943	A549	lung:	n/a	n/a
33	USF1	chr11:66764291-66764477	A549	lung:	n/a	chr11:66764403-66764414
34	GATA3	chr11:66764171-66764912	A549	lung:	n/a	n/a
35	USF1	chr11:66764280-66764482	HepG2	liver:	n/a	chr11:66764403-66764414
36	HDAC2	chr11:66764318-66765028	MCF-7	breast:	n/a	n/a
37	TEAD4	chr11:66764257-66764948	MCF-7	breast:	n/a	n/a
38	RCOR1	chr11:66764283-66765258	IMR90	lung:	n/a	n/a
39	USF1	chr11:66764293-66764543	A549	lung:	n/a	chr11:66764403-66764414
40	FOXM1	chr11:66764263-66764992	MCF-7	breast:	n/a	n/a
41	FOXA2	chr11:66764307-66764737	A549	lung:	n/a	n/a
42	SIN3AK20	chr11:66764071-66765255	MCF-7	breast:	n/a	n/a
43	FOXA1	chr11:66764307-66764782	HepG2	liver:	n/a	n/a
44	NR2F2	chr11:66764289-66765121	MCF-7	breast:	n/a	n/a
45	EP300	chr11:66764175-66765102	MCF-7	breast:	n/a	n/a
46	MYBL2	chr11:66764286-66764814	HepG2	liver:	n/a	n/a
47	FOXM1	chr11:66764186-66765159	MCF-7	breast:	n/a	n/a
48	ZNF217	chr11:66764317-66764997	MCF-7	breast:	n/a	n/a
49	TCF12	chr11:66764084-66764954	A549	lung:	n/a	chr11:66764585-66764595
50	USF1	chr11:66764288-66764627	A549	lung:	n/a	chr11:66764403-66764414

No.	Distal block	Cell Line	Cell type
1	chr11:66763043..66765170-chr11:66796976..66800333,4	MCF-7	breast:
2	chr11:66764153..66769079-chr11:66769260..66775339,9	MCF-7	breast:
3	chr11:66764015..66766435-chr11:66822154..66824249,3	MCF-7	breast:
4	chr11:66764180..66766583-chr11:66780585..66782268,2	MCF-7	breast:
5	chr11:66762811..66772502-chr11:66787021..66797000,34	MCF-7	breast:
6	chr11:66761490..66778711-chr11:66821814..66832221,36	MCF-7	breast:
7	chr11:66762967..66768319-chr11:66788576..66792799,9	MCF-7	breast:
8	chr11:66610071..66611807-chr11:66762959..66765909,2	MCF-7	breast:
9	chr11:66761666..66763201-chr11:66763495..66765562,2	K562	blood:

Variant related genes	Relation type
ENSG00000252709	TF binding region
ENSG00000173227	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000252709	Chromatin interaction
ENSG00000173653	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10160663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10896146	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10896147	1.00[EUR][1000 genomes]
rs10896148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11227664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12222286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273240	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12274897	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12275124	0.96[AFR][1000 genomes]
rs12275370	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12276046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277065	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12279585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281292	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12281335	1.00[EUR][1000 genomes]
rs12281512	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12282433	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12282440	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12284422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285661	1.00[EUR][1000 genomes]
rs12287658	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12288309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288354	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12290308	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12290429	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12290836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12788732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173916	1.00[EUR][1000 genomes]
rs56973649	1.00[EUR][1000 genomes]
rs57604888	1.00[EUR][1000 genomes]
rs57946225	1.00[EUR][1000 genomes]
rs60751057	1.00[EUR][1000 genomes]
rs7109580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73493529	1.00[EUR][1000 genomes]
rs73493531	1.00[EUR][1000 genomes]
rs73501797	1.00[EUR][1000 genomes]
rs73501800	1.00[EUR][1000 genomes]
rs7924894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7925264	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7941982	1.00[EUR][1000 genomes]
rs7942885	1.00[EUR][1000 genomes]
rs7948985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
5	esv1817552	chr11:66751014-66839985	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66755600-66764400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:66763400-66765400	Enhancers	Placenta	Placenta
3	chr11:66763400-66765800	Enhancers	HSMMtube	muscle
4	chr11:66763600-66765000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:66763800-66764400	Enhancers	A549	lung
6	chr11:66763800-66764800	Enhancers	Adipose Nuclei	Adipose
7	chr11:66763800-66764800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:66763800-66765000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:66763800-66765000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:66763800-66765000	Enhancers	Liver	Liver
11	chr11:66763800-66765000	Enhancers	Osteobl	bone
12	chr11:66763800-66765200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:66763800-66765200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:66763800-66765200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:66763800-66765200	Enhancers	Hela-S3	cervix
16	chr11:66763800-66765800	Enhancers	HepG2	liver
17	chr11:66764000-66764800	Enhancers	Right Atrium	heart
18	chr11:66764000-66765200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links