Variant report

Variant	rs61457510
Chromosome Location	chr14:65112971-65112972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17857382	1.00[AMR][1000 genomes]
rs449865	0.83[AFR][1000 genomes]
rs45545942	0.83[AFR][1000 genomes]
rs45557336	1.00[AMR][1000 genomes]
rs58076807	1.00[AMR][1000 genomes]
rs58080394	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60825477	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61212101	1.00[AMR][1000 genomes]
rs61740636	1.00[AMR][1000 genomes]
rs73267723	1.00[AMR][1000 genomes]
rs73267741	1.00[AMR][1000 genomes]
rs73267790	1.00[AMR][1000 genomes]
rs73269707	1.00[AMR][1000 genomes]
rs73269729	1.00[AMR][1000 genomes]
rs73269736	1.00[AMR][1000 genomes]
rs73269785	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73269788	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271614	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271619	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65106800-65115400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:65110600-65116200	Enhancers	Placenta	Placenta
3	chr14:65111000-65113200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65111000-65113400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr14:65111200-65113200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:65111200-65113200	Enhancers	HSMMtube	muscle
7	chr14:65111200-65113400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:65111400-65113200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:65111400-65113200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:65111400-65113200	Enhancers	Fetal Stomach	stomach
11	chr14:65111400-65113200	Enhancers	Ovary	ovary
12	chr14:65111400-65113200	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:65111400-65113200	Enhancers	NH-A	brain
14	chr14:65111400-65113400	Enhancers	Fetal Muscle Leg	muscle
15	chr14:65111600-65113000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr14:65111600-65113200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:65111600-65113200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr14:65111600-65113200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:65111600-65113200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:65111600-65113200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:65111600-65113400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:65111600-65113400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:65111600-65113400	Enhancers	HSMM	muscle
24	chr14:65111600-65113400	Enhancers	NHDF-Ad	bronchial
25	chr14:65111600-65113400	Enhancers	NHLF	lung
26	chr14:65111800-65113000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:65111800-65113000	Enhancers	Adipose Nuclei	Adipose
28	chr14:65111800-65113000	Enhancers	Fetal Heart	heart
29	chr14:65112000-65113000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:65112000-65113000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:65112000-65113000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr14:65112000-65113000	Enhancers	Fetal Kidney	kidney
33	chr14:65112000-65113000	Flanking Active TSS	A549	lung
34	chr14:65112000-65113200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:65112000-65113200	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr14:65112000-65113400	Enhancers	HepG2	liver
37	chr14:65112200-65113000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:65112200-65113000	Weak transcription	Fetal Intestine Large	intestine
39	chr14:65112200-65113200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:65112600-65113000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr14:65112600-65113000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr14:65112600-65113000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr14:65112600-65113000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr14:65112600-65113000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr14:65112600-65113000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:65112600-65113000	Enhancers	Hela-S3	cervix
47	chr14:65112600-65113200	Enhancers	H9 Cell Line	embryonic stem cell
48	chr14:65112600-65113600	Enhancers	Liver	Liver
49	chr14:65112800-65113000	Enhancers	Stomach Smooth Muscle	stomach
50	chr14:65112800-65113200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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