Variant report

Variant	rs73269788
Chromosome Location	chr14:65068919-65068920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17857382	1.00[AMR][1000 genomes]
rs45557336	1.00[AMR][1000 genomes]
rs58076807	1.00[AMR][1000 genomes]
rs58080394	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60825477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61212101	1.00[AMR][1000 genomes]
rs61457510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61740636	1.00[AMR][1000 genomes]
rs73267723	1.00[AMR][1000 genomes]
rs73267741	1.00[AMR][1000 genomes]
rs73267790	1.00[AMR][1000 genomes]
rs73269707	1.00[AMR][1000 genomes]
rs73269729	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73269736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73269759	0.90[AFR][1000 genomes]
rs73269785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271614	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65068400-65069000	Active TSS	Stomach Smooth Muscle	stomach
2	chr14:65068600-65069000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr14:65068600-65078200	Weak transcription	Pancreas	Pancrea
4	chr14:65068800-65069000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr14:65068800-65069000	Bivalent Enhancer	Fetal Intestine Large	intestine
6	chr14:65068800-65069000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr14:65068800-65069200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:65068800-65070000	Weak transcription	Gastric	stomach
9	chr14:65068800-65072600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:65068800-65072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:65068800-65072800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:65068800-65079400	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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