Variant report

Variant	rs61476105
Chromosome Location	chr4:75218958-75218959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75195874..75197815-chr4:75217759..75219523,2	K562	blood:
2	chr4:75198178..75200474-chr4:75217887..75219537,2	K562	blood:
3	chr4:75212380..75215563-chr4:75217930..75219842,3	K562	blood:
4	chr4:75212380..75216971-chr4:75217168..75220297,5	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10518126	0.89[EUR][1000 genomes]
rs1460015	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57346142	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57839099	0.89[EUR][1000 genomes]
rs57933408	0.89[EUR][1000 genomes]
rs59107719	0.89[EUR][1000 genomes]
rs59690065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60611827	0.89[EUR][1000 genomes]
rs60972393	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61549491	0.82[ASN][1000 genomes]
rs61597562	0.89[EUR][1000 genomes]
rs61684000	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6831666	0.89[EUR][1000 genomes]
rs6836436	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6837909	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72859325	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72859327	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72859333	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72859334	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72859338	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72859361	0.89[EUR][1000 genomes]
rs72859363	0.89[EUR][1000 genomes]
rs72859366	0.89[EUR][1000 genomes]
rs7668475	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7669104	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7669542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7674887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675690	0.85[EUR][1000 genomes]
rs7690224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690629	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7696072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75210400-75225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:75211000-75223200	Weak transcription	NHEK	skin
3	chr4:75211600-75223200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:75218600-75219400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:75218800-75219400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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