Variant report

Variant	rs6836436
Chromosome Location	chr4:75230930-75230931
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:173292234..173292806-chr4:75230715..75231293,2	HCT-116	colon:
2	chr4:75192372..75204703-chr4:75227413..75239566,26	K562	blood:
3	chr1:27481095..27481689-chr4:75230415..75231061,2	HCT-116	colon:
4	chr4:75189693..75192750-chr4:75229705..75235376,6	K562	blood:
5	chr4:75228897..75231606-chr4:76648590..76650355,2	K562	blood:
6	chr1:45196372..45196898-chr4:75230821..75231749,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000138768	Chromatin interaction
ENSG00000200169	Chromatin interaction
ENSG00000091409	Chromatin interaction
ENSG00000090020	Chromatin interaction
ENSG00000265720	Chromatin interaction
ENSG00000138757	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10518126	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1246593	1.00[TSI][hapmap]
rs1246595	1.00[TSI][hapmap]
rs1460015	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs572987	1.00[TSI][hapmap]
rs57346142	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57839099	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57933408	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs579866	1.00[TSI][hapmap]
rs59107719	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59690065	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60611827	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60972393	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61476105	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61549491	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61597562	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61684000	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6831666	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6837909	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72859325	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72859327	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72859333	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72859334	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72859338	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72859361	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72859363	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72859366	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs734222	1.00[TSI][hapmap]
rs7668475	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7669104	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669542	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7669666	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7674887	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7675690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7690224	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7690629	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7691008	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7696072	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7697009	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv290978	chr4:75229227-75231385	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75229800-75232000	Active TSS	A549	lung
2	chr4:75230000-75231000	Flanking Active TSS	HMEC	breast
3	chr4:75230000-75231000	Flanking Active TSS	NH-A	brain
4	chr4:75230000-75231200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr4:75230000-75231600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr4:75230000-75231600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
7	chr4:75230000-75231800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr4:75230000-75232000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr4:75230200-75231000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr4:75230200-75231200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:75230200-75231200	Bivalent Enhancer	Fetal Lung	lung
12	chr4:75230200-75231600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:75230200-75231800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr4:75230200-75231800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr4:75230200-75231800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr4:75230200-75231800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:75230200-75232200	Active TSS	Rectal Smooth Muscle	rectum
18	chr4:75230200-75232800	Active TSS	Fetal Intestine Small	intestine
19	chr4:75230400-75231000	Enhancers	Fetal Heart	heart
20	chr4:75230400-75231000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
21	chr4:75230400-75231000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr4:75230400-75231200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:75230400-75231200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:75230400-75231200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:75230400-75231200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr4:75230400-75231200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr4:75230400-75231200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:75230400-75231200	Bivalent/Poised TSS	Aorta	Aorta
29	chr4:75230400-75231200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
30	chr4:75230400-75231200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
31	chr4:75230400-75231200	Bivalent Enhancer	Fetal Thymus	thymus
32	chr4:75230400-75231200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
33	chr4:75230400-75231200	Flanking Bivalent TSS/Enh	Thymus	Thymus
34	chr4:75230400-75231400	Bivalent Enhancer	Liver	Liver
35	chr4:75230400-75231400	Flanking Active TSS	HUVEC	blood vessel
36	chr4:75230400-75231400	Active TSS	Monocytes-CD14+_RO01746	blood
37	chr4:75230400-75231600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:75230400-75231600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr4:75230400-75231600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
40	chr4:75230400-75231600	Active TSS	Esophagus	oesophagus
41	chr4:75230400-75231600	Active TSS	Right Ventricle	heart
42	chr4:75230400-75231800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
43	chr4:75230400-75231800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
44	chr4:75230400-75231800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr4:75230400-75231800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
46	chr4:75230400-75231800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
47	chr4:75230400-75231800	Bivalent Enhancer	Fetal Brain Male	brain
48	chr4:75230400-75231800	Enhancers	Spleen	Spleen
49	chr4:75230400-75232200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:75230400-75232200	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links