Variant report

Variant	rs61501878
Chromosome Location	chr5:115994344-115994345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17140261	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140298	0.88[EUR][1000 genomes]
rs28441147	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55816914	0.88[EUR][1000 genomes]
rs58479811	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73259298	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73259299	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73261463	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73261484	0.82[EUR][1000 genomes]
rs73783813	0.82[EUR][1000 genomes]
rs9327017	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115987600-115996400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:115989400-115996400	Weak transcription	Fetal Stomach	stomach
3	chr5:115990800-115995800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:115991600-115996200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:115992600-115997000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:115993400-115995000	Enhancers	NHEK	skin
7	chr5:115993600-115994800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:115993600-115994800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:115993800-115994600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:115993800-115995000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:115993800-115995000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:115993800-115995000	Enhancers	HMEC	breast
13	chr5:115994000-115994400	Enhancers	Fetal Lung	lung
14	chr5:115994000-115994600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:115994000-115994800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr5:115994000-115995000	Enhancers	GM12878-XiMat	blood
17	chr5:115994200-115994600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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