Variant report

Variant	rs73261463
Chromosome Location	chr5:115988182-115988183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17140261	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140298	0.88[EUR][1000 genomes]
rs28441147	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55816914	0.88[EUR][1000 genomes]
rs58479811	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61501878	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73259298	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73259299	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73261484	0.82[EUR][1000 genomes]
rs73783813	0.82[EUR][1000 genomes]
rs9327017	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115985600-115991600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:115985800-115989800	Enhancers	Fetal Brain Male	brain
3	chr5:115987000-115989000	Enhancers	Fetal Muscle Leg	muscle
4	chr5:115987000-115989400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:115987000-115989800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:115987000-115991400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:115987200-115988200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:115987200-115988400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:115987200-115988400	Enhancers	HepG2	liver
10	chr5:115987200-115991200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:115987400-115988400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:115987400-115988800	Enhancers	Psoas Muscle	Psoas
13	chr5:115987400-115989200	Enhancers	Brain Germinal Matrix	brain
14	chr5:115987600-115988600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:115987600-115988600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:115987600-115988600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:115987600-115989000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:115987600-115989000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr5:115987600-115989400	Enhancers	Fetal Stomach	stomach
20	chr5:115987600-115989600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:115987600-115989600	Enhancers	Fetal Brain Female	brain
22	chr5:115987600-115996400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:115987800-115988200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:115987800-115988200	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr5:115987800-115988200	Active TSS	Brain Hippocampus Middle	brain
26	chr5:115987800-115988600	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr5:115987800-115988600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr5:115987800-115988800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:115987800-115988800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:115987800-115989000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:115987800-115989000	Enhancers	HMEC	breast
32	chr5:115987800-115989400	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr5:115988000-115988200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:115988000-115988200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:115988000-115988200	Enhancers	Fetal Lung	lung
36	chr5:115988000-115988200	Flanking Active TSS	GM12878-XiMat	blood
37	chr5:115988000-115988400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr5:115988000-115988400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:115988000-115988400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr5:115988000-115988400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr5:115988000-115988400	Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr5:115988000-115988400	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr5:115988000-115988400	Active TSS	Stomach Smooth Muscle	stomach
44	chr5:115988000-115988600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr5:115988000-115988600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr5:115988000-115988600	Active TSS	Brain Substantia Nigra	brain
47	chr5:115988000-115988600	Enhancers	HSMM	muscle
48	chr5:115988000-115988600	Flanking Active TSS	HSMMtube	muscle
49	chr5:115988000-115988800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr5:115988000-115988800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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