Variant report

Variant	rs9327017
Chromosome Location	chr5:116005872-116005873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10519479	0.81[GIH][hapmap]
rs10519481	0.81[GIH][hapmap]
rs17140271	0.88[EUR][1000 genomes]
rs17140298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17140301	0.89[EUR][1000 genomes]
rs55816914	1.00[EUR][1000 genomes]
rs61501878	0.88[EUR][1000 genomes]
rs73261463	0.88[EUR][1000 genomes]
rs73261484	0.94[EUR][1000 genomes]
rs73783813	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115997800-116006000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:116001200-116007000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:116003600-116013400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:116004400-116006000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:116004600-116007400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:116005000-116011000	Weak transcription	Brain Angular Gyrus	brain
7	chr5:116005200-116006200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:116005200-116006400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:116005400-116006200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:116005400-116006200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:116005400-116006200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:116005400-116006400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:116005400-116007000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:116005400-116007600	Enhancers	Brain Substantia Nigra	brain
15	chr5:116005600-116006000	Enhancers	GM12878-XiMat	blood
16	chr5:116005600-116007200	Enhancers	Brain Hippocampus Middle	brain
17	chr5:116005600-116007600	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:116005600-116008200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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