Variant report

Variant	rs61511968
Chromosome Location	chr6:118282655-118282656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2501627	1.00[EUR][1000 genomes]
rs521352	1.00[EUR][1000 genomes]
rs528595	1.00[EUR][1000 genomes]
rs59005352	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs618196	1.00[EUR][1000 genomes]
rs73517506	1.00[EUR][1000 genomes]
rs73519566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73519570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73519591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73519599	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118278000-118283400	Weak transcription	Brain Germinal Matrix	brain
2	chr6:118278200-118283400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:118279000-118283200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:118280000-118284400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:118281800-118284200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:118281800-118284400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118282000-118282800	Enhancers	Brain Angular Gyrus	brain
8	chr6:118282200-118284200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:118282400-118284400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:118282600-118282800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:118282600-118283000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:118282600-118283600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:118282600-118285600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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