Variant report

Variant	rs73519599
Chromosome Location	chr6:118313605-118313606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs521352	1.00[EUR][1000 genomes]
rs528595	1.00[EUR][1000 genomes]
rs59005352	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61511968	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs618196	1.00[EUR][1000 genomes]
rs73517506	1.00[EUR][1000 genomes]
rs73519566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73519570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73519591	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521510	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118305600-118315400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118308400-118314200	Weak transcription	Fetal Brain Female	brain
3	chr6:118309200-118315200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:118310000-118315200	Enhancers	Brain Hippocampus Middle	brain
5	chr6:118311400-118315000	Enhancers	Brain Angular Gyrus	brain
6	chr6:118312200-118314000	Weak transcription	Brain Substantia Nigra	brain
7	chr6:118313400-118314800	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:118313600-118314400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:118313600-118315200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr6:118313600-118315400	Enhancers	Brain Germinal Matrix	brain
11	chr6:118313600-118315600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:118313600-118315600	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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