Variant report

Variant	rs61519361
Chromosome Location	chr2:37528872-37528873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12621268	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55912911	1.00[EUR][1000 genomes]
rs57400672	1.00[EUR][1000 genomes]
rs58186361	1.00[EUR][1000 genomes]
rs58283784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59635910	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60172229	1.00[EUR][1000 genomes]
rs61622947	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72863151	1.00[EUR][1000 genomes]
rs72863156	1.00[EUR][1000 genomes]
rs72863167	1.00[EUR][1000 genomes]
rs72863171	1.00[EUR][1000 genomes]
rs72863172	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863189	1.00[EUR][1000 genomes]
rs72864813	0.90[EUR][1000 genomes]
rs7592627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61519361	RCL1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
2	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
4	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
6	chr2:37500200-37530200	Weak transcription	Gastric	stomach
7	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
8	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
9	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
10	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:37502800-37533800	Weak transcription	Lung	lung
12	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
13	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
16	chr2:37510800-37532200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
18	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:37511200-37530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
21	chr2:37513600-37543200	Weak transcription	NHLF	lung
22	chr2:37515600-37530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:37516600-37532800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
27	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:37518800-37532600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr2:37518800-37539000	Weak transcription	Fetal Lung	lung
32	chr2:37518800-37545400	Weak transcription	NH-A	brain
33	chr2:37519000-37529800	Weak transcription	Fetal Thymus	thymus
34	chr2:37519000-37534200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:37519000-37549400	Weak transcription	HSMM	muscle
36	chr2:37519200-37529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr2:37519200-37530200	Weak transcription	Primary B cells from cord blood	blood
38	chr2:37519200-37532200	Weak transcription	Primary T cells from cord blood	blood
39	chr2:37519200-37532400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr2:37519200-37532600	Weak transcription	Fetal Intestine Large	intestine
41	chr2:37519200-37543800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr2:37519200-37545600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:37519400-37532400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr2:37520000-37529800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr2:37520000-37532200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr2:37520200-37530200	Weak transcription	Fetal Stomach	stomach
47	chr2:37520200-37543400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr2:37520200-37545400	Weak transcription	Ovary	ovary
49	chr2:37520200-37549600	Weak transcription	Fetal Muscle Leg	muscle
50	chr2:37520400-37529000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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