Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:37545726..37548175-chr2:37554305..37557162,2	K562	blood:
2	chr2:37543073..37544935-chr2:37554432..37557348,2	K562	blood:
3	chr2:37549953..37551637-chr2:37554820..37556399,2	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12621268	0.90[EUR][1000 genomes]
rs28548299	0.87[AMR][1000 genomes]
rs55912911	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57400672	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58186361	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58283784	1.00[EUR][1000 genomes]
rs59635910	1.00[EUR][1000 genomes]
rs60172229	0.90[EUR][1000 genomes]
rs61519361	0.90[EUR][1000 genomes]
rs61622947	1.00[EUR][1000 genomes]
rs72863151	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72863156	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72863167	0.90[EUR][1000 genomes]
rs72863171	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72863172	0.90[EUR][1000 genomes]
rs72863186	0.90[EUR][1000 genomes]
rs72863188	0.90[EUR][1000 genomes]
rs72863189	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72875762	0.85[AMR][1000 genomes]
rs7592627	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37553800-37562200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:37554000-37557800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:37555200-37557400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: