Variant report

Variant	rs61538123
Chromosome Location	chr8:85306164-85306165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16912733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912736	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912815	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58010882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58428339	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61435433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61698585	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298731	1.00[AMR][1000 genomes]
rs73298773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300753	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300760	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300762	0.92[AFR][1000 genomes]
rs73300764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300766	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300768	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300782	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300785	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300793	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300796	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831808	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831842	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834453	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1030263	chr8:85293666-85332024	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85304000-85309400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:85305000-85309200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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