Variant report

Variant	rs16912815
Chromosome Location	chr8:85340173-85340174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1388411	0.85[YRI][hapmap]
rs16912712	1.00[YRI][hapmap]
rs16912717	1.00[YRI][hapmap]
rs16912718	1.00[YRI][hapmap]
rs16912720	1.00[YRI][hapmap]
rs16912723	1.00[YRI][hapmap]
rs16912724	1.00[YRI][hapmap]
rs16912730	1.00[YRI][hapmap]
rs16912733	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912735	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912736	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912740	1.00[YRI][hapmap]
rs16912742	1.00[YRI][hapmap]
rs16912744	1.00[YRI][hapmap]
rs16912748	1.00[YRI][hapmap]
rs16912749	1.00[YRI][hapmap]
rs16912753	1.00[YRI][hapmap]
rs16912757	1.00[YRI][hapmap]
rs16912760	1.00[YRI][hapmap]
rs16912762	1.00[YRI][hapmap]
rs16912764	0.88[YRI][hapmap]
rs16912772	0.88[YRI][hapmap]
rs16912773	0.88[YRI][hapmap]
rs16912774	0.85[YRI][hapmap]
rs16912775	0.88[YRI][hapmap]
rs16912776	0.87[YRI][hapmap]
rs16912780	0.85[YRI][hapmap]
rs16912785	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912786	0.87[YRI][hapmap]
rs16912787	0.88[YRI][hapmap]
rs16912788	0.88[YRI][hapmap]
rs16912790	0.88[YRI][hapmap]
rs16912791	0.88[YRI][hapmap]
rs16912793	0.88[YRI][hapmap]
rs16912795	0.85[YRI][hapmap]
rs16912801	0.85[YRI][hapmap]
rs16919779	0.85[YRI][hapmap]
rs16922856	1.00[YRI][hapmap]
rs58010882	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58428339	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61435433	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61538123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61698585	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298731	1.00[AMR][1000 genomes]
rs73298773	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300751	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300753	1.00[AMR][1000 genomes]
rs73300755	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300756	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300760	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300762	0.84[AFR][1000 genomes]
rs73300764	1.00[AMR][1000 genomes]
rs73300766	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300768	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300782	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300785	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300787	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300789	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300793	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300796	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300798	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816160	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819778	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820097	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820544	0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831808	0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834453	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835302	0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85338200-85341200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:85338200-85341400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:85338800-85340200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:85339400-85340200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:85339800-85340200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:85339800-85340200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:85339800-85340200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:85340000-85343600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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