Variant report

Variant	rs16912774
Chromosome Location	chr8:85296965-85296966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1388411	1.00[YRI][hapmap]
rs1491562	0.82[YRI][hapmap]
rs16912712	0.85[YRI][hapmap]
rs16912717	0.85[YRI][hapmap]
rs16912718	0.85[YRI][hapmap]
rs16912720	1.00[YRI][hapmap]
rs16912723	0.85[YRI][hapmap]
rs16912724	0.85[YRI][hapmap]
rs16912730	0.85[YRI][hapmap]
rs16912733	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912735	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912736	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912740	1.00[YRI][hapmap]
rs16912742	0.85[YRI][hapmap]
rs16912744	0.85[YRI][hapmap]
rs16912748	0.85[YRI][hapmap]
rs16912749	0.85[YRI][hapmap]
rs16912753	0.85[YRI][hapmap]
rs16912760	0.85[YRI][hapmap]
rs16912762	0.85[YRI][hapmap]
rs16912764	1.00[YRI][hapmap]
rs16912772	1.00[YRI][hapmap]
rs16912773	1.00[YRI][hapmap]
rs16912775	1.00[YRI][hapmap]
rs16912776	1.00[YRI][hapmap]
rs16912780	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs16912785	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912786	1.00[YRI][hapmap]
rs16912787	1.00[YRI][hapmap]
rs16912788	1.00[YRI][hapmap]
rs16912790	1.00[YRI][hapmap]
rs16912791	1.00[YRI][hapmap]
rs16912793	1.00[YRI][hapmap]
rs16912795	1.00[YRI][hapmap]
rs16912801	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs16912815	0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16919779	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs16922856	1.00[YRI][hapmap]
rs58010882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58428339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61435433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61538123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61698585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298730	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298731	1.00[AMR][1000 genomes]
rs73298773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300762	0.98[AFR][1000 genomes]
rs73300764	1.00[AMR][1000 genomes]
rs73300766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300789	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819778	0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820097	0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820544	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831808	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7831842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835302	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1030263	chr8:85293666-85332024	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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