Variant report

Variant	rs61542337
Chromosome Location	chr6:121628563-121628564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10214599	0.98[ASN][1000 genomes]
rs10214635	1.00[ASN][1000 genomes]
rs1273749	0.86[EUR][1000 genomes]
rs1273768	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273769	0.96[ASN][1000 genomes]
rs1273770	0.96[ASN][1000 genomes]
rs17083281	0.96[ASN][1000 genomes]
rs1776811	0.96[ASN][1000 genomes]
rs1925225	0.96[ASN][1000 genomes]
rs1925226	0.96[ASN][1000 genomes]
rs2038832	0.96[ASN][1000 genomes]
rs2088834	0.96[ASN][1000 genomes]
rs28462240	0.96[ASN][1000 genomes]
rs4119568	0.96[ASN][1000 genomes]
rs57491732	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57670849	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57819930	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58006622	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58056179	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58114094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58606544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58914731	1.00[ASN][1000 genomes]
rs59569667	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60013326	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61244484	0.96[ASN][1000 genomes]
rs61449799	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61504659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73524575	0.96[ASN][1000 genomes]
rs73524585	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73526615	1.00[ASN][1000 genomes]
rs73526618	1.00[ASN][1000 genomes]
rs73526626	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526664	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73526669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528503	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73528525	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73528529	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528530	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73528543	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73528561	0.96[ASN][1000 genomes]
rs73540546	0.96[ASN][1000 genomes]
rs7747201	0.96[ASN][1000 genomes]
rs785402	0.96[ASN][1000 genomes]
rs9320810	0.96[ASN][1000 genomes]
rs9320811	0.91[ASN][1000 genomes]
rs9482125	1.00[ASN][1000 genomes]
rs9482143	0.96[ASN][1000 genomes]
rs9482145	0.96[ASN][1000 genomes]
rs9490141	0.98[ASN][1000 genomes]
rs9490142	1.00[ASN][1000 genomes]
rs9490182	0.96[ASN][1000 genomes]
rs9490183	0.96[ASN][1000 genomes]
rs9490185	0.96[ASN][1000 genomes]
rs9490186	0.96[ASN][1000 genomes]
rs9490187	0.96[ASN][1000 genomes]
rs9490188	0.96[ASN][1000 genomes]
rs9490189	0.96[ASN][1000 genomes]
rs9490190	0.96[ASN][1000 genomes]
rs9885639	0.96[ASN][1000 genomes]
rs9885671	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1017944	chr6:121600538-121644362	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:121588800-121642000	Weak transcription	Left Ventricle	heart
4	chr6:121589000-121632800	Weak transcription	Fetal Lung	lung
5	chr6:121589000-121635200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:121589000-121637600	Weak transcription	Ovary	ovary
7	chr6:121589000-121654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:121589200-121630000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:121589200-121631800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:121589200-121655000	Weak transcription	Fetal Stomach	stomach
11	chr6:121590200-121630800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:121594200-121654800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:121601600-121635200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:121602600-121637800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:121603000-121632600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:121604000-121645200	Weak transcription	Fetal Kidney	kidney
17	chr6:121604400-121642000	Weak transcription	Primary B cells from cord blood	blood
18	chr6:121604800-121653000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:121606600-121655000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:121611000-121630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:121611000-121640400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:121611200-121655000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:121612600-121637600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:121613200-121637600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:121613400-121631000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:121613400-121640400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:121614000-121630600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:121614200-121631600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:121614200-121633200	Weak transcription	Dnd41	blood
30	chr6:121614200-121640400	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:121615600-121655000	Weak transcription	Pancreas	Pancrea
32	chr6:121616000-121630000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:121616200-121655000	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:121617200-121651600	Weak transcription	GM12878-XiMat	blood
35	chr6:121617800-121628600	Weak transcription	Primary T cells from cord blood	blood
36	chr6:121619000-121640400	Weak transcription	Brain Anterior Caudate	brain
37	chr6:121619200-121630800	Weak transcription	Osteobl	bone
38	chr6:121620200-121640400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:121622200-121654600	Weak transcription	Fetal Thymus	thymus
40	chr6:121622600-121655000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:121622800-121640400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:121622800-121654800	Weak transcription	Brain Germinal Matrix	brain
43	chr6:121623600-121630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:121624200-121644800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:121628200-121640400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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