Variant report

Variant	rs9482145
Chromosome Location	chr6:121671684-121671685
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:121671365-121671824	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-1286P	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10214599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10214635	0.96[ASN][1000 genomes]
rs1273750	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs1273768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1273769	0.91[ASN][1000 genomes]
rs1273770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1632545	1.00[EUR][1000 genomes]
rs17083281	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1776811	0.91[ASN][1000 genomes]
rs1925225	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925226	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038832	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088834	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2651528	1.00[EUR][1000 genomes]
rs28462240	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2884396	0.82[CHB][hapmap]
rs4119568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57491732	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57670849	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57819930	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58006622	0.96[ASN][1000 genomes]
rs58056179	0.96[ASN][1000 genomes]
rs58114094	0.96[ASN][1000 genomes]
rs58914731	0.96[ASN][1000 genomes]
rs59569667	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60013326	0.92[ASN][1000 genomes]
rs61244484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61449799	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61504659	0.96[ASN][1000 genomes]
rs61542337	0.96[ASN][1000 genomes]
rs73524575	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73524585	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526615	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526618	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526626	0.96[ASN][1000 genomes]
rs73526641	0.96[ASN][1000 genomes]
rs73526653	0.96[ASN][1000 genomes]
rs73526664	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526669	0.96[ASN][1000 genomes]
rs73526687	0.96[ASN][1000 genomes]
rs73526697	0.96[ASN][1000 genomes]
rs73528503	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528525	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528529	0.96[ASN][1000 genomes]
rs73528530	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528561	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540546	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7747201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766150	0.88[CHB][hapmap]
rs785402	0.91[ASN][1000 genomes]
rs9320810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320811	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482125	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482143	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490141	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9490142	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9490182	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490185	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490188	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885671	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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