Variant report

Variant	rs73528543
Chromosome Location	chr6:121660734-121660735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121654494..121658196-chr6:121658584..121663246,8	K562	blood:
2	chr6:121653058..121658241-chr6:121659261..121663570,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146350	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10214599	0.94[ASN][1000 genomes]
rs10214635	0.96[ASN][1000 genomes]
rs1273710	1.00[EUR][1000 genomes]
rs1273712	1.00[EUR][1000 genomes]
rs1273750	1.00[EUR][1000 genomes]
rs1273752	1.00[EUR][1000 genomes]
rs1273768	0.91[ASN][1000 genomes]
rs1273769	0.91[ASN][1000 genomes]
rs1273770	0.91[ASN][1000 genomes]
rs1632545	1.00[EUR][1000 genomes]
rs17083281	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1776811	0.91[ASN][1000 genomes]
rs1925225	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925226	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038832	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088834	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2651528	1.00[EUR][1000 genomes]
rs28462240	1.00[ASN][1000 genomes]
rs4119568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56790796	1.00[EUR][1000 genomes]
rs57491732	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57670849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57819930	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58006622	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58056179	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58114094	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs58606544	0.83[AFR][1000 genomes]
rs58914731	0.96[ASN][1000 genomes]
rs59569667	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60013326	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61244484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61449799	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61504659	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61542337	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73524575	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73524585	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526615	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526618	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526626	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73526641	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73526653	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73526664	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73526669	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73526687	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73526697	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73528503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528529	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73528530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540503	1.00[EUR][1000 genomes]
rs73540546	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7747201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785402	0.91[ASN][1000 genomes]
rs9320810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482125	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490141	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9490142	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9490182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121656200-121662000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:121656800-121660800	Weak transcription	Fetal Kidney	kidney
3	chr6:121656800-121661000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:121657200-121660800	Weak transcription	K562	blood
5	chr6:121657200-121661200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:121659600-121661200	Enhancers	Fetal Stomach	stomach
7	chr6:121660000-121660800	Enhancers	Fetal Lung	lung
8	chr6:121660600-121661600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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