Variant report

Variant	rs56790796
Chromosome Location	chr6:121473350-121473351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1273710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273711	1.00[ASN][1000 genomes]
rs1273712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273749	1.00[ASN][1000 genomes]
rs1273750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273754	1.00[ASN][1000 genomes]
rs1273768	0.81[ASN][1000 genomes]
rs1273769	0.81[ASN][1000 genomes]
rs1273770	0.81[ASN][1000 genomes]
rs1290677	0.97[ASN][1000 genomes]
rs1314810	1.00[ASN][1000 genomes]
rs1632545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083119	0.92[ASN][1000 genomes]
rs17083169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1776811	0.81[ASN][1000 genomes]
rs1925225	1.00[EUR][1000 genomes]
rs1925226	1.00[EUR][1000 genomes]
rs2088834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs218864	0.92[ASN][1000 genomes]
rs218865	0.92[ASN][1000 genomes]
rs218866	0.92[ASN][1000 genomes]
rs2651528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797954	1.00[ASN][1000 genomes]
rs394714	0.92[ASN][1000 genomes]
rs402296	0.92[ASN][1000 genomes]
rs432721	0.92[ASN][1000 genomes]
rs57151972	1.00[ASN][1000 genomes]
rs57491732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57670849	1.00[EUR][1000 genomes]
rs57819930	1.00[EUR][1000 genomes]
rs59569667	1.00[EUR][1000 genomes]
rs61449799	1.00[EUR][1000 genomes]
rs6935956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73524575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73524585	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526664	1.00[EUR][1000 genomes]
rs73528503	1.00[EUR][1000 genomes]
rs73528525	1.00[EUR][1000 genomes]
rs73528530	1.00[EUR][1000 genomes]
rs73528543	1.00[EUR][1000 genomes]
rs73536423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73536447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73538413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540546	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7747201	1.00[EUR][1000 genomes]
rs785402	0.81[ASN][1000 genomes]
rs9482125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9482143	1.00[EUR][1000 genomes]
rs9490141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490182	1.00[EUR][1000 genomes]
rs9490183	1.00[EUR][1000 genomes]
rs9490185	1.00[EUR][1000 genomes]
rs9490186	1.00[EUR][1000 genomes]
rs9490187	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121463600-121474200	Weak transcription	Ovary	ovary
6	chr6:121463600-121476800	Weak transcription	Gastric	stomach
7	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
8	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:121465600-121473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:121470000-121474200	Weak transcription	Fetal Stomach	stomach
12	chr6:121470000-121474400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:121471200-121474000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:121472600-121474200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:121472600-121474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:121472600-121481600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:121473000-121474000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:121473000-121474200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:121473000-121474200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:121473200-121474200	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr6:121473200-121474600	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:121473200-121476200	ZNF genes & repeats	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links