Variant report

Variant	rs1273710
Chromosome Location	chr6:121468970-121468971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1273711	1.00[ASN][1000 genomes]
rs1273712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273729	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273749	1.00[ASN][1000 genomes]
rs1273750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273754	1.00[ASN][1000 genomes]
rs1273768	0.81[ASN][1000 genomes]
rs1273769	0.81[ASN][1000 genomes]
rs1273770	0.81[ASN][1000 genomes]
rs1290677	0.97[ASN][1000 genomes]
rs1314810	1.00[ASN][1000 genomes]
rs1632545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083119	0.92[ASN][1000 genomes]
rs17083169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1776811	0.81[ASN][1000 genomes]
rs2088834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs218864	0.92[ASN][1000 genomes]
rs218865	0.92[ASN][1000 genomes]
rs218866	0.92[ASN][1000 genomes]
rs2651528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797954	1.00[ASN][1000 genomes]
rs394714	0.92[ASN][1000 genomes]
rs402296	0.92[ASN][1000 genomes]
rs432721	0.92[ASN][1000 genomes]
rs56790796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57151972	1.00[ASN][1000 genomes]
rs57491732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57670849	1.00[EUR][1000 genomes]
rs57819930	1.00[EUR][1000 genomes]
rs59569667	1.00[EUR][1000 genomes]
rs61449799	1.00[EUR][1000 genomes]
rs6569177	0.84[AFR][1000 genomes]
rs6935956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73524575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73524585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526615	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526618	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526664	1.00[EUR][1000 genomes]
rs73528503	1.00[EUR][1000 genomes]
rs73528525	1.00[EUR][1000 genomes]
rs73528530	1.00[EUR][1000 genomes]
rs73528543	1.00[EUR][1000 genomes]
rs73536423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73536447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73538413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs785402	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9482125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490142	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121463400-121469600	Weak transcription	Fetal Stomach	stomach
7	chr6:121463600-121474200	Weak transcription	Ovary	ovary
8	chr6:121463600-121476800	Weak transcription	Gastric	stomach
9	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
10	chr6:121464200-121473200	Weak transcription	Dnd41	blood
11	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:121465600-121473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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