Variant report

Variant	rs73540503
Chromosome Location	chr6:121475332-121475333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1273710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273711	1.00[ASN][1000 genomes]
rs1273712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273749	1.00[ASN][1000 genomes]
rs1273750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273754	1.00[ASN][1000 genomes]
rs1273768	0.81[ASN][1000 genomes]
rs1273769	0.81[ASN][1000 genomes]
rs1273770	0.81[ASN][1000 genomes]
rs1290677	0.97[ASN][1000 genomes]
rs1314810	1.00[ASN][1000 genomes]
rs1632545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083119	0.92[ASN][1000 genomes]
rs17083169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1776811	0.81[ASN][1000 genomes]
rs1925225	1.00[EUR][1000 genomes]
rs1925226	1.00[EUR][1000 genomes]
rs2088834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs218864	0.92[ASN][1000 genomes]
rs218865	0.92[ASN][1000 genomes]
rs218866	0.92[ASN][1000 genomes]
rs2651528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797954	1.00[ASN][1000 genomes]
rs394714	0.92[ASN][1000 genomes]
rs402296	0.92[ASN][1000 genomes]
rs432721	0.92[ASN][1000 genomes]
rs56790796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57151972	1.00[ASN][1000 genomes]
rs57491732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57670849	1.00[EUR][1000 genomes]
rs57819930	1.00[EUR][1000 genomes]
rs59569667	1.00[EUR][1000 genomes]
rs61244484	1.00[EUR][1000 genomes]
rs61449799	1.00[EUR][1000 genomes]
rs6935956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73524575	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73524585	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526664	1.00[EUR][1000 genomes]
rs73528503	1.00[EUR][1000 genomes]
rs73528525	1.00[EUR][1000 genomes]
rs73528530	1.00[EUR][1000 genomes]
rs73528543	1.00[EUR][1000 genomes]
rs73536423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73536447	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73538413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540546	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7747201	1.00[EUR][1000 genomes]
rs785402	0.81[ASN][1000 genomes]
rs9320810	1.00[EUR][1000 genomes]
rs9320811	1.00[EUR][1000 genomes]
rs9482125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9482143	1.00[EUR][1000 genomes]
rs9490141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490182	1.00[EUR][1000 genomes]
rs9490183	1.00[EUR][1000 genomes]
rs9490185	1.00[EUR][1000 genomes]
rs9490186	1.00[EUR][1000 genomes]
rs9490187	1.00[EUR][1000 genomes]
rs9885639	1.00[EUR][1000 genomes]
rs9885671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121463600-121476800	Weak transcription	Gastric	stomach
2	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:121472600-121481600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:121473200-121476200	ZNF genes & repeats	Dnd41	blood
5	chr6:121473400-121480600	Weak transcription	Small Intestine	intestine
6	chr6:121473400-121499000	Weak transcription	Right Ventricle	heart
7	chr6:121473800-121475600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr6:121473800-121476000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:121473800-121476400	ZNF genes & repeats	Liver	Liver
10	chr6:121474000-121475400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:121474000-121475400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:121474000-121475600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr6:121474000-121475600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr6:121474000-121475600	ZNF genes & repeats	Fetal Intestine Large	intestine
15	chr6:121474000-121475600	ZNF genes & repeats	Placenta	Placenta
16	chr6:121474200-121475400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:121474200-121475400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:121474200-121475400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:121474200-121475400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:121474200-121475400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:121474200-121475400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:121474200-121475600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:121474200-121475600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr6:121474200-121475600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:121474200-121475600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:121474200-121475600	ZNF genes & repeats	Aorta	Aorta
27	chr6:121474200-121475600	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr6:121474200-121475600	ZNF genes & repeats	Fetal Stomach	stomach
29	chr6:121474200-121475600	Strong transcription	Ovary	ovary
30	chr6:121474200-121475800	ZNF genes & repeats	Fetal Lung	lung
31	chr6:121474200-121476800	Strong transcription	Primary T cells from cord blood	blood
32	chr6:121474200-121478400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:121474200-121478600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:121474200-121479600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:121474200-121483400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:121474400-121475400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:121474400-121475400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:121474400-121475400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:121474400-121475400	ZNF genes & repeats	Fetal Muscle Leg	muscle
40	chr6:121474400-121475400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
41	chr6:121474400-121475600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:121474400-121475600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr6:121474400-121475600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr6:121474400-121475600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:121474400-121475600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:121474400-121475600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr6:121474400-121475600	Strong transcription	Left Ventricle	heart
48	chr6:121474400-121475600	Strong transcription	Pancreas	Pancrea
49	chr6:121474400-121475600	ZNF genes & repeats	Thymus	Thymus
50	chr6:121474400-121476000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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