Variant report

Variant	rs61553534
Chromosome Location	chr3:59481902-59481903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17060878	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17060879	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17060883	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35500604	0.86[AMR][1000 genomes]
rs58468498	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72875698	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877405	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72877406	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72877416	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877418	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877424	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877430	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877432	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877434	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877442	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877443	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72877447	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72877448	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72877450	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72877453	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72877456	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72877460	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7638203	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7646357	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9871940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3371612	chr3:59478812-59483010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59481600-59482000	Enhancers	Fetal Thymus	thymus
2	chr3:59481600-59482400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:59481800-59484000	Enhancers	GM12878-XiMat	blood

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