Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17060878	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17060879	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17060883	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35500604	0.81[AMR][1000 genomes]
rs58468498	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61553534	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72875698	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72877406	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877416	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877418	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877424	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877430	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877432	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877434	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877442	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877443	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72877447	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72877448	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72877450	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72877453	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72877456	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72877460	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7638203	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7646357	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9871940	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59492400-59501000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:59498000-59500600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:59498200-59500600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:59498600-59499000	Enhancers	Fetal Muscle Leg	muscle

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