Variant report

Variant	rs35500604
Chromosome Location	chr3:59504310-59504311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17060878	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17060879	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17060883	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs41502947	0.83[ASN][1000 genomes]
rs58468498	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60650957	0.83[ASN][1000 genomes]
rs61553534	0.86[AMR][1000 genomes]
rs72875698	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72877405	0.81[AMR][1000 genomes]
rs72877406	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72877416	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877418	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877421	0.83[ASN][1000 genomes]
rs72877424	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72877427	0.83[ASN][1000 genomes]
rs72877429	0.83[ASN][1000 genomes]
rs72877430	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877432	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877433	0.83[ASN][1000 genomes]
rs72877434	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877437	0.83[ASN][1000 genomes]
rs72877442	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877443	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877445	0.83[ASN][1000 genomes]
rs72877446	0.83[ASN][1000 genomes]
rs72877447	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877448	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877450	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72877453	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72877455	0.83[ASN][1000 genomes]
rs72877456	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72877460	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7356070	0.83[ASN][1000 genomes]
rs7638203	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7646357	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9311713	0.83[ASN][1000 genomes]
rs9832635	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9840238	0.83[ASN][1000 genomes]
rs9848047	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9865717	0.97[EUR][1000 genomes]
rs9865729	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9869699	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9870039	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9871940	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59503000-59505200	Enhancers	Stomach Mucosa	stomach
2	chr3:59503200-59504400	Weak transcription	Pancreas	Pancrea
3	chr3:59503400-59504600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:59503400-59504600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:59503600-59505800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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