Variant report

Variant	rs9870039
Chromosome Location	chr3:59505017-59505018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17060878	1.00[ASN][1000 genomes]
rs17060879	1.00[ASN][1000 genomes]
rs17060883	0.91[ASN][1000 genomes]
rs35500604	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41502947	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs58468498	1.00[ASN][1000 genomes]
rs60650957	0.94[ASN][1000 genomes]
rs72877406	0.82[ASN][1000 genomes]
rs72877416	1.00[ASN][1000 genomes]
rs72877418	1.00[ASN][1000 genomes]
rs72877421	0.94[ASN][1000 genomes]
rs72877424	0.91[ASN][1000 genomes]
rs72877427	0.94[ASN][1000 genomes]
rs72877429	0.94[ASN][1000 genomes]
rs72877430	1.00[ASN][1000 genomes]
rs72877432	1.00[ASN][1000 genomes]
rs72877433	0.94[ASN][1000 genomes]
rs72877434	1.00[ASN][1000 genomes]
rs72877437	0.94[ASN][1000 genomes]
rs72877442	1.00[ASN][1000 genomes]
rs72877443	1.00[ASN][1000 genomes]
rs72877445	0.94[ASN][1000 genomes]
rs72877446	0.94[ASN][1000 genomes]
rs72877447	1.00[ASN][1000 genomes]
rs72877448	1.00[ASN][1000 genomes]
rs72877450	0.91[ASN][1000 genomes]
rs72877453	0.95[ASN][1000 genomes]
rs72877455	0.94[ASN][1000 genomes]
rs72877456	1.00[ASN][1000 genomes]
rs72877460	1.00[ASN][1000 genomes]
rs7356070	0.94[ASN][1000 genomes]
rs7638203	1.00[ASN][1000 genomes]
rs7646357	1.00[ASN][1000 genomes]
rs9311713	0.94[ASN][1000 genomes]
rs9832635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840238	0.94[ASN][1000 genomes]
rs9848047	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865717	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9865729	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869699	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59503000-59505200	Enhancers	Stomach Mucosa	stomach
2	chr3:59503600-59505800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:59504400-59505200	Enhancers	Pancreas	Pancrea
4	chr3:59504600-59505200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:59504600-59505200	Enhancers	HUES6 Cell Line	embryonic stem cell

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